Click here to switch to the map view.

The map label for this gene is yhbQ [C]

Identifier: 78222650

GI number: 78222650

Start: 1608477

End: 1608737

Strand: Direct

Name: yhbQ [C]

Synonym: Gmet_1438

Alternate gene names: 78222650

Gene position: 1608477-1608737 (Clockwise)

Preceding gene: 78222649

Following gene: 78222651

Centisome position: 40.24

GC content: 55.17

Gene sequence:

>261_bases
GTGAGCTGGCAGGTTTACATAATCCTTTGCTCCGACAATTCGTTGTATACCGGGATTACTACGGATCTTGACCGGAGGTT
CCGCCAGCATGCAGGTGGGACTGGCGCAAAGTATTTCCGGGGACGGCGACCGCTGCGGGTAGTCTATCTTGAAAACGACC
ACAGCCGCTCGTCAGCCGCCAGCAGGGAAGCGAAGATCAAGGCCATGGGCCGTACCGAGAAAATGAATCTGATCACCACA
ACGTCTTTGCGGGCAAGGTAA

Upstream 100 bases:

>100_bases
CAATTATCGGTTAGCACAGAGCGTTGGAAACGGCGGTGAGTAATCTCAATCCCAATCGGAGACTGATCAATCTGACGACC
AGATTGGCGGGTGTTTAAAA

Downstream 100 bases:

>100_bases
GTACATGTGTAGGTGTGTAGCCGGGTAAGAGGATAACATGGCCGGACATGTCGTTGTCGGTACCGACGTGCGTCGATAAT
GAATCAAGACAGCTTTCGAC

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSWQVYIILCSDNSLYTGITTDLDRRFRQHAGGTGAKYFRGRRPLRVVYLENDHSRSSAASREAKIKAMGRTEKMNLITT
TSLRAR

Sequences:

>Translated_86_residues
MSWQVYIILCSDNSLYTGITTDLDRRFRQHAGGTGAKYFRGRRPLRVVYLENDHSRSSAASREAKIKAMGRTEKMNLITT
TSLRAR
>Mature_85_residues
SWQVYIILCSDNSLYTGITTDLDRRFRQHAGGTGAKYFRGRRPLRVVYLENDHSRSSAASREAKIKAMGRTEKMNLITTT
SLRAR

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

Organism=Escherichia coli, GI1789545, Length=77, Percent_Identity=41.5584415584416, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 9853; Mature: 9722

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWQVYIILCSDNSLYTGITTDLDRRFRQHAGGTGAKYFRGRRPLRVVYLENDHSRSSAA
CCEEEEEEEECCCCEEECCCCHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCCCCC
SREAKIKAMGRTEKMNLITTTSLRAR
CCCEEEEECCCCCCEEEEEECEEECC
>Mature Secondary Structure 
SWQVYIILCSDNSLYTGITTDLDRRFRQHAGGTGAKYFRGRRPLRVVYLENDHSRSSAA
CEEEEEEEECCCCEEECCCCHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCCCCC
SREAKIKAMGRTEKMNLITTTSLRAR
CCCEEEEECCCCCCEEEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA