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The map label for this gene is rfaQ [H]

Identifier: 78222622

GI number: 78222622

Start: 1578140

End: 1579243

Strand: Direct

Name: rfaQ [H]

Synonym: Gmet_1410

Alternate gene names: 78222622

Gene position: 1578140-1579243 (Clockwise)

Preceding gene: 78222621

Following gene: 78222623

Centisome position: 39.48

GC content: 51.99

Gene sequence:

>1104_bases
ATGAACCTTCGACTGATTAAAGCTGCGGATGCCATTCTCGGACGGGTAGCGACAGTCTTGCTTCCGGCGCCGGTTGTTGG
TTGCTATGGGACTTCAATCCGATCGGTCCTTTTTATTCGTCCCGGTGGGATTGGAGATGCTGTGCTCCTGATCCCAGCGA
TTCTTTCCTTCAGGAACAAGTATCCTAAAGCACGGATAACGGTTCTTGCTGAGAAGAGAAATGGTGCGGTTTTTACTCTA
TGTTCAGTTATCGATGAGATTTTGCTCTACGACAATAATGGCGAACTGTTTATGGCACTTCGCGGCAGCTACGATGCGGT
AATAGATACCGAGCAGTGGCATCGGTTGTCGGCCGTAGTGGCGCGTATGACTTGGGCGCAGATTTTGATAGGTTTCGGCA
CAAATGTGCGTTCTCGTCTTTTTACGCATCAGCTTGACTATGAGCAGAGTGATTACGAAGAGACTAGTTTTTTGCGTCTT
TTGACCTCGCTTGGAATTGCCGTAACGCAAACCTCTGTGCCGTTTCTGACGGTTCCTACTCCTGCGGCGTCTGTTGCTGA
GGTGCTTCTTGGTGAACTTGCTGACAGAACCTTTGTTGTGATTTTTCCTGGAGCCAGTATTCCGGAACGTCGGTGGGGGG
CGGATAAGTTTCGGCAGGTTGCGAAACGGTTATCAGCCAAAGGTGTCAGTGGGGTAGTTGTCGGGGGGGAGGATGACAGG
GGGGAGGGGGAGCGCATTGTCGCTGATACCGGATGGCTGAATCTGATGGGGGAGACGTCGTTACAGGAAACTACGGCAAT
CATCGAAAGAAGCTCCCTCCTCGTCAGCGGCGATTCCGGCATCCTCCACATCGCCGTAGGCCTCGGCATTCCCACGGTCT
CCCTCTTTGGTCCGGGGAGGGAAAAGAAATGGGCGCCCCGTGGCGACAATCATATTGTCATCAACAAGCATCTCCCCTGT
TCTCCTTGCACCACCTTCGGCTATACGCCAAAATGTCCCATTAACGCTCGCTGCATGGCGGAAATATCCGTTGACGAGGT
TGAGCAAGCGGTATTGACGCTTCTGGACCGGAAAAATTTTGACAAGCACCAACAAAAACCTTGA

Upstream 100 bases:

>100_bases
TGTGCCTGTGTCTTTAGGATTTGTAGACAATAGAACAACTTTTGCCGATATTTTCTGGAAATCCCTTCTCCATGGATGAA
CTCTGGTCACTAAGACTTTT

Downstream 100 bases:

>100_bases
CTTCTCCTGGAGTAGTTGGTATCTAGAGAATCCGTTTTGCTTGTAGGCGCGTAGCTCAGGGGGAGAGCGCTACCTTGACA
CGGTAGAGGTCGGCGGTTCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNLRLIKAADAILGRVATVLLPAPVVGCYGTSIRSVLFIRPGGIGDAVLLIPAILSFRNKYPKARITVLAEKRNGAVFTL
CSVIDEILLYDNNGELFMALRGSYDAVIDTEQWHRLSAVVARMTWAQILIGFGTNVRSRLFTHQLDYEQSDYEETSFLRL
LTSLGIAVTQTSVPFLTVPTPAASVAEVLLGELADRTFVVIFPGASIPERRWGADKFRQVAKRLSAKGVSGVVVGGEDDR
GEGERIVADTGWLNLMGETSLQETTAIIERSSLLVSGDSGILHIAVGLGIPTVSLFGPGREKKWAPRGDNHIVINKHLPC
SPCTTFGYTPKCPINARCMAEISVDEVEQAVLTLLDRKNFDKHQQKP

Sequences:

>Translated_367_residues
MNLRLIKAADAILGRVATVLLPAPVVGCYGTSIRSVLFIRPGGIGDAVLLIPAILSFRNKYPKARITVLAEKRNGAVFTL
CSVIDEILLYDNNGELFMALRGSYDAVIDTEQWHRLSAVVARMTWAQILIGFGTNVRSRLFTHQLDYEQSDYEETSFLRL
LTSLGIAVTQTSVPFLTVPTPAASVAEVLLGELADRTFVVIFPGASIPERRWGADKFRQVAKRLSAKGVSGVVVGGEDDR
GEGERIVADTGWLNLMGETSLQETTAIIERSSLLVSGDSGILHIAVGLGIPTVSLFGPGREKKWAPRGDNHIVINKHLPC
SPCTTFGYTPKCPINARCMAEISVDEVEQAVLTLLDRKNFDKHQQKP
>Mature_367_residues
MNLRLIKAADAILGRVATVLLPAPVVGCYGTSIRSVLFIRPGGIGDAVLLIPAILSFRNKYPKARITVLAEKRNGAVFTL
CSVIDEILLYDNNGELFMALRGSYDAVIDTEQWHRLSAVVARMTWAQILIGFGTNVRSRLFTHQLDYEQSDYEETSFLRL
LTSLGIAVTQTSVPFLTVPTPAASVAEVLLGELADRTFVVIFPGASIPERRWGADKFRQVAKRLSAKGVSGVVVGGEDDR
GEGERIVADTGWLNLMGETSLQETTAIIERSSLLVSGDSGILHIAVGLGIPTVSLFGPGREKKWAPRGDNHIVINKHLPC
SPCTTFGYTPKCPINARCMAEISVDEVEQAVLTLLDRKNFDKHQQKP

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=292, Percent_Identity=26.3698630136986, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790050, Length=294, Percent_Identity=23.8095238095238, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40029; Mature: 40029

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRLIKAADAILGRVATVLLPAPVVGCYGTSIRSVLFIRPGGIGDAVLLIPAILSFRNK
CCEEEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
YPKARITVLAEKRNGAVFTLCSVIDEILLYDNNGELFMALRGSYDAVIDTEQWHRLSAVV
CCCEEEEEEEECCCCCEEHHHHHHHHHEEECCCCCEEEEEECCCCEEECHHHHHHHHHHH
ARMTWAQILIGFGTNVRSRLFTHQLDYEQSDYEETSFLRLLTSLGIAVTQTSVPFLTVPT
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEECC
PAASVAEVLLGELADRTFVVIFPGASIPERRWGADKFRQVAKRLSAKGVSGVVVGGEDDR
CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
GEGERIVADTGWLNLMGETSLQETTAIIERSSLLVSGDSGILHIAVGLGIPTVSLFGPGR
CCCCEEEEECCCEEECCCCHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCEEEEECCCC
EKKWAPRGDNHIVINKHLPCSPCTTFGYTPKCPINARCMAEISVDEVEQAVLTLLDRKNF
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
DKHQQKP
CHHCCCC
>Mature Secondary Structure
MNLRLIKAADAILGRVATVLLPAPVVGCYGTSIRSVLFIRPGGIGDAVLLIPAILSFRNK
CCEEEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
YPKARITVLAEKRNGAVFTLCSVIDEILLYDNNGELFMALRGSYDAVIDTEQWHRLSAVV
CCCEEEEEEEECCCCCEEHHHHHHHHHEEECCCCCEEEEEECCCCEEECHHHHHHHHHHH
ARMTWAQILIGFGTNVRSRLFTHQLDYEQSDYEETSFLRLLTSLGIAVTQTSVPFLTVPT
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEECC
PAASVAEVLLGELADRTFVVIFPGASIPERRWGADKFRQVAKRLSAKGVSGVVVGGEDDR
CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
GEGERIVADTGWLNLMGETSLQETTAIIERSSLLVSGDSGILHIAVGLGIPTVSLFGPGR
CCCCEEEEECCCEEECCCCHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCEEEEECCCC
EKKWAPRGDNHIVINKHLPCSPCTTFGYTPKCPINARCMAEISVDEVEQAVLTLLDRKNF
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
DKHQQKP
CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA