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The map label for this gene is tapC [H]

Identifier: 78222607

GI number: 78222607

Start: 1562595

End: 1563812

Strand: Direct

Name: tapC [H]

Synonym: Gmet_1395

Alternate gene names: 78222607

Gene position: 1562595-1563812 (Clockwise)

Preceding gene: 78222606

Following gene: 78222608

Centisome position: 39.09

GC content: 60.26

Gene sequence:

>1218_bases
ATGCCGAAATTCAGTTGGGAAGCGCGAAGCAGGACCGGAGCGGCTCAGAAGGGGGTCATGGAGGCCGCGAGCGCGGCTGC
CGTGGAAGCACAGCTCAAGAAGTTCGGGTTTGGCTCCATCTCCGTGAAGGAGGAGGGAAAAGGGCTCAGCATGGAGCTGA
AGCTCCCCGGCTTCGGGAAGAAGGTGGAGACGAAGGATCTCGTCATCTTCACCCGGCAGTTCGCCACCATGATTGATTCG
GGCCTGCCGCTGGTCCAGTGCCTCGATATTCTCTCCAGCCAGCAGGAGAACGCGACCTTCAAGGAAGTTCTCATCAAGGT
GAAAGAGACGGTGGAGGGGGGCTCCACCTTTGCCGATGCCCTGTCGAAGCACCCCAAGGTCTTCGACCAGCTCTTCGTGA
ACCTGGTTGCCGCCGGCGAGGTGGGGGGTATCCTCGATACCATCCTCAACCGTCTCGCCGCCTACATCGAAAAGGCCATG
AAGCTCAAGAAGCAGATCAAGGGGGCCATGGTCTATCCGGCCACCATCATGACCATTGCCATCGGCGTAGTGGCGGTCAT
CCTGATCTTCGTCATTCCCACTTTTGCCAAGATGTTCGCCGATTTTGGGGGAGAGTTGCCGGGAGCCACCAAATTCGTCA
TTGCCCTCAGCAACTTTGTGGTGAAGTACATCCTCCTCATCATCGGACTCATCTTCGCCGTGGTTGTGGCCATCAAGAAG
TACTACGCCACGCCGAACGGGAAGAAGACCCTGGACACCCTCGCCCTCAAGGCCCCCATTGCCGGCCCCCTCATCCGGAA
GGTTTCGGTGGCCCGCTTTACTCGTACCCTCGGCACCCTCATCTCCAGCGGCGTGCCGATCATGGACGGGCTTGAGATCG
TTGCCAAAACCGCCGGCAACAAGGTGGTGGAGGAGGCGGTCTACAAGGTGAGGAGTTCCATCGCCGAAGGTAAGACCATG
GCCGAACCGCTCCAGGAGTGCGGCGTCTTTCCCCCCATGGTGGTCCAGATGATCTCCGTCGGTGAGGCCACCGGCGCCAT
GGACGCCATGCTGAGCAAGATCGCCGACTTCTACGACGACGAGGTGGACGATGCCGTGAGCGCCCTCACGGCCCTCATGG
AGCCGATGCTCATGGTGTTCCTCGGCACCACCGTGGGGGGCCTTGTCATCGCCATGTACCTGCCGATTTTCAAGCTGGCC
GGAACCGTCGGCGGTTAG

Upstream 100 bases:

>100_bases
CCCGACGAGCTCAAGCAGATGCTTACCAGCGGTGTGCGGCCCCAGGCGCCGCGCCCCCCCATGAGATAAACAGGATTCGG
AAGGAAGCAGGAGGATAGCA

Downstream 100 bases:

>100_bases
CCGGAGCCGATGTACAGAGAACGGCTCGTATGGTTCATCCTTGCCCGGGTGGTGGTGGTTTCCCTCTTTCTTTTCTCCAC
CATTGTCCTGCGCGCGCGGG

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPKFSWEARSRTGAAQKGVMEAASAAAVEAQLKKFGFGSISVKEEGKGLSMELKLPGFGKKVETKDLVIFTRQFATMIDS
GLPLVQCLDILSSQQENATFKEVLIKVKETVEGGSTFADALSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAM
KLKKQIKGAMVYPATIMTIAIGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILLIIGLIFAVVVAIKK
YYATPNGKKTLDTLALKAPIAGPLIRKVSVARFTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAVYKVRSSIAEGKTM
AEPLQECGVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDDAVSALTALMEPMLMVFLGTTVGGLVIAMYLPIFKLA
GTVGG

Sequences:

>Translated_405_residues
MPKFSWEARSRTGAAQKGVMEAASAAAVEAQLKKFGFGSISVKEEGKGLSMELKLPGFGKKVETKDLVIFTRQFATMIDS
GLPLVQCLDILSSQQENATFKEVLIKVKETVEGGSTFADALSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAM
KLKKQIKGAMVYPATIMTIAIGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILLIIGLIFAVVVAIKK
YYATPNGKKTLDTLALKAPIAGPLIRKVSVARFTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAVYKVRSSIAEGKTM
AEPLQECGVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDDAVSALTALMEPMLMVFLGTTVGGLVIAMYLPIFKLA
GTVGG
>Mature_404_residues
PKFSWEARSRTGAAQKGVMEAASAAAVEAQLKKFGFGSISVKEEGKGLSMELKLPGFGKKVETKDLVIFTRQFATMIDSG
LPLVQCLDILSSQQENATFKEVLIKVKETVEGGSTFADALSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAMK
LKKQIKGAMVYPATIMTIAIGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILLIIGLIFAVVVAIKKY
YATPNGKKTLDTLALKAPIAGPLIRKVSVARFTRTLGTLISSGVPIMDGLEIVAKTAGNKVVEEAVYKVRSSIAEGKTMA
EPLQECGVFPPMVVQMISVGEATGAMDAMLSKIADFYDDEVDDAVSALTALMEPMLMVFLGTTVGGLVIAMYLPIFKLAG
TVGG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=25.8706467661692, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786295, Length=408, Percent_Identity=27.6960784313726, Blast_Score=161, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43153; Mature: 43022

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFSWEARSRTGAAQKGVMEAASAAAVEAQLKKFGFGSISVKEEGKGLSMELKLPGFGK
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCC
KVETKDLVIFTRQFATMIDSGLPLVQCLDILSSQQENATFKEVLIKVKETVEGGSTFADA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
LSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPATIMTIA
HHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILLIIGLIFAVVVAIKK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYATPNGKKTLDTLALKAPIAGPLIRKVSVARFTRTLGTLISSGVPIMDGLEIVAKTAGN
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCH
KVVEEAVYKVRSSIAEGKTMAEPLQECGVFPPMVVQMISVGEATGAMDAMLSKIADFYDD
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
EVDDAVSALTALMEPMLMVFLGTTVGGLVIAMYLPIFKLAGTVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PKFSWEARSRTGAAQKGVMEAASAAAVEAQLKKFGFGSISVKEEGKGLSMELKLPGFGK
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCC
KVETKDLVIFTRQFATMIDSGLPLVQCLDILSSQQENATFKEVLIKVKETVEGGSTFADA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
LSKHPKVFDQLFVNLVAAGEVGGILDTILNRLAAYIEKAMKLKKQIKGAMVYPATIMTIA
HHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IGVVAVILIFVIPTFAKMFADFGGELPGATKFVIALSNFVVKYILLIIGLIFAVVVAIKK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYATPNGKKTLDTLALKAPIAGPLIRKVSVARFTRTLGTLISSGVPIMDGLEIVAKTAGN
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCH
KVVEEAVYKVRSSIAEGKTMAEPLQECGVFPPMVVQMISVGEATGAMDAMLSKIADFYDD
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
EVDDAVSALTALMEPMLMVFLGTTVGGLVIAMYLPIFKLAGTVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]