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The map label for this gene is ygaU [C]

Identifier: 78222570

GI number: 78222570

Start: 1521033

End: 1521725

Strand: Direct

Name: ygaU [C]

Synonym: Gmet_1358

Alternate gene names: 78222570

Gene position: 1521033-1521725 (Clockwise)

Preceding gene: 78222569

Following gene: 78222571

Centisome position: 38.05

GC content: 55.56

Gene sequence:

>693_bases
ATGAAGACGAGAAACCTGGCAATGGTTTCGGTGCTGGCTCTTTGCCTTGCTGGTTGTGCTCAGGGGCTGCCACGTTACCG
TACCGAGGCCCTGACAAAATTCTCTTCTGTGAGGATGCAGGGGGGAGAACGCGCTAGGGCAGAAGAATTTACGAGTATTA
CCGATGCACTTGAAGCCGGAGATCGGCTCCTTGAGCGCAACCGGGTTTCGGATGCCGAGCAGTTCTATCTCCTTGCCCTT
AGGAAGTCAGAGTTGGCAGAACAACAACTCGCTGCCGAGAATGTACGTCATGAAGCACAAAGGCTCAAGGCTGAAGAGGA
TCGCCGTGCAGCCGAGCGGCAGAGGATCCTTGAGGAGCAAAAGCGCCGCATGATTGAAGAGCGTGAAAGGGAGGCGCGAG
AGACTCGAAAGAAAGTCGATAAACCTGTAGCTGTCAAGGAGAAGGAGCGGGAGGTTCGTCATCTCCCCTCTGTTCACACG
GTAAAGCGAGGGGAGACGCTGCCCCAGATTGCAGCTCAATCCGAGGTATATGGCGATGCCTTACTGTGGCCGCTCATTTA
TCGTGCGAACAGGGATCAGATACGCGACCCGAAGAGAATCTGGCCGGGGCAGGTGCTCCGGATACCGAGAAATGCGGGGC
GGGATGATATTGCGGAAGCTCACCGCATTGCCCAAGAACGTCGTCTGCAATAG

Upstream 100 bases:

>100_bases
GAGCTTGTCTCATGTCAGAAGCTCCTTCCCCTGTTGATGCAAAACAACTCAGGGAACTTGCTCTCAAGGTGACCGTCAAG
CAATGAGAGCGGAAAAGTGA

Downstream 100 bases:

>100_bases
TCGTGAATATGAACGGAAGCCGGGTTAAACCCGGCTTTTTTGCGTGTAACTTCAAGGTATTTTTGTCGTAAACGGAAAAT
AGTTTTTCCTTGACAGTACA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain Lipoprotein

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKTRNLAMVSVLALCLAGCAQGLPRYRTEALTKFSSVRMQGGERARAEEFTSITDALEAGDRLLERNRVSDAEQFYLLAL
RKSELAEQQLAAENVRHEAQRLKAEEDRRAAERQRILEEQKRRMIEEREREARETRKKVDKPVAVKEKEREVRHLPSVHT
VKRGETLPQIAAQSEVYGDALLWPLIYRANRDQIRDPKRIWPGQVLRIPRNAGRDDIAEAHRIAQERRLQ

Sequences:

>Translated_230_residues
MKTRNLAMVSVLALCLAGCAQGLPRYRTEALTKFSSVRMQGGERARAEEFTSITDALEAGDRLLERNRVSDAEQFYLLAL
RKSELAEQQLAAENVRHEAQRLKAEEDRRAAERQRILEEQKRRMIEEREREARETRKKVDKPVAVKEKEREVRHLPSVHT
VKRGETLPQIAAQSEVYGDALLWPLIYRANRDQIRDPKRIWPGQVLRIPRNAGRDDIAEAHRIAQERRLQ
>Mature_230_residues
MKTRNLAMVSVLALCLAGCAQGLPRYRTEALTKFSSVRMQGGERARAEEFTSITDALEAGDRLLERNRVSDAEQFYLLAL
RKSELAEQQLAAENVRHEAQRLKAEEDRRAAERQRILEEQKRRMIEEREREARETRKKVDKPVAVKEKEREVRHLPSVHT
VKRGETLPQIAAQSEVYGDALLWPLIYRANRDQIRDPKRIWPGQVLRIPRNAGRDDIAEAHRIAQERRLQ

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26709; Mature: 26709

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRNLAMVSVLALCLAGCAQGLPRYRTEALTKFSSVRMQGGERARAEEFTSITDALEAG
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DRLLERNRVSDAEQFYLLALRKSELAEQQLAAENVRHEAQRLKAEEDRRAAERQRILEEQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRMIEEREREARETRKKVDKPVAVKEKEREVRHLPSVHTVKRGETLPQIAAQSEVYGDA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHH
LLWPLIYRANRDQIRDPKRIWPGQVLRIPRNAGRDDIAEAHRIAQERRLQ
HHHHHHHHCCHHHCCCCHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTRNLAMVSVLALCLAGCAQGLPRYRTEALTKFSSVRMQGGERARAEEFTSITDALEAG
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DRLLERNRVSDAEQFYLLALRKSELAEQQLAAENVRHEAQRLKAEEDRRAAERQRILEEQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRMIEEREREARETRKKVDKPVAVKEKEREVRHLPSVHTVKRGETLPQIAAQSEVYGDA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHH
LLWPLIYRANRDQIRDPKRIWPGQVLRIPRNAGRDDIAEAHRIAQERRLQ
HHHHHHHHCCHHHCCCCHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA