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The map label for this gene is yqxC [H]

Identifier: 78222437

GI number: 78222437

Start: 1377707

End: 1378489

Strand: Direct

Name: yqxC [H]

Synonym: Gmet_1222

Alternate gene names: 78222437

Gene position: 1377707-1378489 (Clockwise)

Preceding gene: 78222436

Following gene: 78222438

Centisome position: 34.46

GC content: 63.09

Gene sequence:

>783_bases
ATGACCTCTCCCGCATCTCCATCCGGAATCCGCAACAGGGAGCGCCTCGACAAGCTCCTGGTGGACCGGGGGCTCGTTCA
GTCCCGGGAGCGTGCCCGCGCCCTCATCATGGCTGGCCAGGTGGTGGTGAACGACCATCTGGCGGACAAAGCTGGAACCC
AGGTGCCCCTGGACGCCGATATCCGCCTCAAGGGGGAGGATATCCCCTTTGTGAGCCGCGGCGGGCTCAAGCTTGCCCGG
GCACTTGACGAGTTCGGCCTCGACGTGACGGACATGGTTGCCATCGACGTGGGGGCTTCCACCGGCGGCTTCACCGATTG
CCTGCTCCAGCGAGGGGCCCGCAAGGTCTACGCCGTTGACGTGGGGTACGGCCAGCTGGCCTGGAAACTCCGTCAGGACC
CGCGCGTGGTGAACCTCGAGAAGACCAACATCCGGTACCTGGAGCCGGACGCACTCCCTGAGGTTCCTGACCTGGCAGTC
ATCGACGCCTCGTTCATCTCCCTAGACAAGGTGCTCCCCCCGACCCTTCGCCTCATTCGTGACGGCGGCGCCGTTGTCGC
GCTCATTAAGCCCCAGTTCGAGGTGGGAAAGGGCGAAGTGGGGAAAGGGGGGGTCGTGCGGGATGAAGGGAAGCACCGGG
AGGTGGTTGACAATGTCGTTGCCCTGGCCGAATCCCTCGATCTTCAGGTGGGGGGCATAACCGAATCGCCGATTCTCGGG
CCGAAGGGGAACCGGGAATTTCTGATCCATCTGATTAAACGGCACATTTCCCCTAATTCATAA

Upstream 100 bases:

>100_bases
GCCATCGAAAGGCCGAACGGAAAAGAGCCTATCAACCTGCAACCGAAGCGCTCCCTCTTGCAGCAGAGGATGGTCCGTCC
TACAGAAAGTCCTGATCTCC

Downstream 100 bases:

>100_bases
CCTCAAACCCATCACATCGATTATGACCATCCGTATTCTCCATACCGCCGATCTCCATTTGGGCTCTTCCCTGAAGAATT
TTGGGGAATTGGCCCGGGAA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTSPASPSGIRNRERLDKLLVDRGLVQSRERARALIMAGQVVVNDHLADKAGTQVPLDADIRLKGEDIPFVSRGGLKLAR
ALDEFGLDVTDMVAIDVGASTGGFTDCLLQRGARKVYAVDVGYGQLAWKLRQDPRVVNLEKTNIRYLEPDALPEVPDLAV
IDASFISLDKVLPPTLRLIRDGGAVVALIKPQFEVGKGEVGKGGVVRDEGKHREVVDNVVALAESLDLQVGGITESPILG
PKGNREFLIHLIKRHISPNS

Sequences:

>Translated_260_residues
MTSPASPSGIRNRERLDKLLVDRGLVQSRERARALIMAGQVVVNDHLADKAGTQVPLDADIRLKGEDIPFVSRGGLKLAR
ALDEFGLDVTDMVAIDVGASTGGFTDCLLQRGARKVYAVDVGYGQLAWKLRQDPRVVNLEKTNIRYLEPDALPEVPDLAV
IDASFISLDKVLPPTLRLIRDGGAVVALIKPQFEVGKGEVGKGGVVRDEGKHREVVDNVVALAESLDLQVGGITESPILG
PKGNREFLIHLIKRHISPNS
>Mature_259_residues
TSPASPSGIRNRERLDKLLVDRGLVQSRERARALIMAGQVVVNDHLADKAGTQVPLDADIRLKGEDIPFVSRGGLKLARA
LDEFGLDVTDMVAIDVGASTGGFTDCLLQRGARKVYAVDVGYGQLAWKLRQDPRVVNLEKTNIRYLEPDALPEVPDLAVI
DASFISLDKVLPPTLRLIRDGGAVVALIKPQFEVGKGEVGKGGVVRDEGKHREVVDNVVALAESLDLQVGGITESPILGP
KGNREFLIHLIKRHISPNS

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28130; Mature: 27999

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPASPSGIRNRERLDKLLVDRGLVQSRERARALIMAGQVVVNDHLADKAGTQVPLDAD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCCCCC
IRLKGEDIPFVSRGGLKLARALDEFGLDVTDMVAIDVGASTGGFTDCLLQRGARKVYAVD
EEECCCCCCEECCCCHHHHHHHHHHCCCEEHEEEEECCCCCCCHHHHHHHCCCCEEEEEE
VGYGQLAWKLRQDPRVVNLEKTNIRYLEPDALPEVPDLAVIDASFISLDKVLPPTLRLIR
CCCCCEEEEECCCCEEEEEECCCEEEECCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHH
DGGAVVALIKPQFEVGKGEVGKGGVVRDEGKHREVVDNVVALAESLDLQVGGITESPILG
CCCEEEEEECCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCC
PKGNREFLIHLIKRHISPNS
CCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSPASPSGIRNRERLDKLLVDRGLVQSRERARALIMAGQVVVNDHLADKAGTQVPLDAD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCCCCC
IRLKGEDIPFVSRGGLKLARALDEFGLDVTDMVAIDVGASTGGFTDCLLQRGARKVYAVD
EEECCCCCCEECCCCHHHHHHHHHHCCCEEHEEEEECCCCCCCHHHHHHHCCCCEEEEEE
VGYGQLAWKLRQDPRVVNLEKTNIRYLEPDALPEVPDLAVIDASFISLDKVLPPTLRLIR
CCCCCEEEEECCCCEEEEEECCCEEEECCCCCCCCCCEEEECHHHHHHHHCCCHHHHHHH
DGGAVVALIKPQFEVGKGEVGKGGVVRDEGKHREVVDNVVALAESLDLQVGGITESPILG
CCCEEEEEECCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCC
PKGNREFLIHLIKRHISPNS
CCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]