| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is fixL [H]
Identifier: 78222433
GI number: 78222433
Start: 1372309
End: 1375110
Strand: Direct
Name: fixL [H]
Synonym: Gmet_1218
Alternate gene names: 78222433
Gene position: 1372309-1375110 (Clockwise)
Preceding gene: 78222432
Following gene: 78222434
Centisome position: 34.33
GC content: 55.28
Gene sequence:
>2802_bases ATGAAGAGGGGGGAGCCGTTGAAGGGGGAAGGCAAAAAGTTACGGATAGGTGAAGATACCCGGTCGACGGGCCGGAACAA ACAGCACAGCAGCAGGGTAAAGGGGAGCGAAGAGGAAATTTCCTTTCTTGCCGATTTGCTTGAAGGCTCCGATCAGCCCT TTGGTATCGGTTACCCGGACGGAAGAATCGGCCACGTGAACGGCGCTTTCGAGCGGCTTACCGGCTACAGCAGGGAAGAA TTGCGGGCCATGAACTGGAACAGCTCTCTCACCCCGCCCGAATGGCTGGACAGGGAACGGGCGATACGGGAGGAGATTTG CCGCACTGGCGAGTCCGTTAGGTATGAGAAGGAATATATCCGGAAAGATGGCGCTCGGATTCCGGTCGAACTTCTCGTCC ATGTCAAAAAGGATGAAGCAGGCAGCCCCCTCTATTACTACTCCTTCATAACCGATATAACCGAGCGCAAGAGGCTCGAT AATCAAATACAACGTCTTTCCTATTTCCCACAGTTCAACCCGAATCCGATAGTCGAGACCGATTACGCCGGCAGGGTAAC TGTCTGTAATCCGGCCACGCACAAGGTTCTTGAGAGCATCGGCGCGGGGGCCGATCCCGGCCTGTTTGTCCCCGCGGATC TGGGCACTATTCTCCATGAGTGGGACGGAAAAAGCGAAGCAAGCACTATCTGCGAGCTTTCCATCGGCACGAGGGTCTTC CGCGAGACCATTTTTTTTACTCCCCAGTTTCCTGTCGTGCGCATCTATGTCCACGATATCACCGATATCAGAAATGCCGA GAAGTCGCTGCGAGAAAACGAGGAACGGCTCCGGCTCTTCATCGAGCACGCTCCCGCAGGACTCGCGATGTTTGATCGCG ATATGCGTTACCTGAACGTCAGCCGGCGCTGGCTGACCGACTACAGGCTCGGCGACCGTGATCTGCGCGGATTAAGCCAC TACGAGGTTTTCCCGGAGATTCCCGAAGAGTGGAAGGAAGCCCAACGCCGCGGGCTGGCCGGGGAGGAACTACGGGCGGA AGGAGACCGTTTCATGCGGGCCGACGGCTCGCTGCAGTGGATACGGTGGGAGATTCATCCCTGGCACGATTCGTCGGATC AAGTGGCTGGAATTGTTATTTTCTCCGAAGACATCACCGAGAGTAAGAAGGCAGAGGAAAAGATTTTACTGTTAAACCAG CAATTGGAACAGCGGGCAGCCGAGTCGCAGCTTATCCTCGACACCTCGCCCATCGGCCTGGCTATTGCCAACGATCCCCA AGGCGTCATGATTCGGGGGAATCCGGCCCTGGAAAAGTTGCTTGGAGTAACGGCCGGCAGCGAACTTTCCAAAAATGCGT TCAACTCGGCAGGTTATCGGGTTTTCAAGAATGGGGAGGCGATTGCTCCATCGCAATTGCCCATGCAACGGGCTGCCCGC GGTGAACCCGTTTCCGGAGAAACCCTCGACATCGTACGGGAGGATGGGACCGGTCTGAATCTGTACTGTTCCGCAGCAAC GCTGCGGGATAATGAAGGAAAGCCATGCGGGGCCGTCGGTGCCTTTATGGATATAACCGAACGCAAGGAGTTGGAGGATG TTGTCATCAAGAGCCAGCTCGACACCTATGCCATCCTTGACAACATCCCCTTTAATGCCTGGCTCAAGGACACGGAAGGT CGCTATGTGAAGGTGAATTGGCAGTTCGCTACATTCTGCGGCTACACATCGCCGAAAGAGGTTGTCGGGAAAACGGACAT GGACCTCTGGCCTATGCACATGGCCGAGGCATATTGCGCCGACGATCAGGACGTCATGAGGAGCGGCCAGAGAAAATTAA TCGAAGAACAGGTTGTTGAGCATGGAGAGGAGAGGTGGTTTGAAACGTTCAAGGCACCCCGGTTTGACCAGAACGGCACG GTCATCGGCACGACCGGTATTGCCAAAGACATCACCGAAGCCAAGAGGGCCGTGGAAGCTTTGCAGTCTATCCGCAACGA ACTGGAGCAGAAGGTTGCGGAGCGAACCTGGGAGCTTGCTACCGCGCTCAATGACTTGCGAAAAGAGAGCTCTGACCGTA TCCAGGCTCTGGAGGCGCTCCGCGAACAGGAGCGGCTTCTCATCCATCAGGGGCGTCTCGCGGCCATGGGGGAGATGATC GGCAATATCGCGCATCAGTGGCGGCAGCCGTTGAATACGCTGGGGCTCATCATTCAGGGGCTCTCCATGAGTGAAGAGTT GGGCGAGCTCACGAAAGACCACCTTGATGAAAGAGTTAACCGGGCCATGCAGCTGATTTATCACATGTCCCAGACCATCG ACGACTTCAGGAATTTCTTCAGGCCCGACAAGGAAAAAGTCCGGTTTGAAATGAAGCAGGCGATCAATAACGCTCTTTCC CTTATGGGAGATAACTTCAGGAGTCTCGGGATAGAGGTTTCGTGCGACTCCCCACAGGACATGTCTATCGCCGGATATCC CAATGAATTTTCCCAAGCACTCCTCAATATTCTCATGAATGCCCGGGATGTCCTCCAGGAGCGGAAAGTGGAGGCCCCGC GTGTCTTGGTGCGTCTGTTCGCGGAAGATAACCGCGCTGTGGTCACCATTGCGGACAATGGTGGTGGTATTGATAGGGAG ATCATTGGAAAGGTATTCGATCCGTACTTCACCTCAAAGGGCCCGAGCAGCGGTACAGGGCTCGGGCTCTTCATCGCGAA GACCATTATCGAAAAGAACATGGGTGGTACGCTCACCGTGCGCAATAGCGGCGAAGGAGCGGAATTCAGGATAGAGGTCT GA
Upstream 100 bases:
>100_bases CGGGGTTCGAATCAGATAGTCCAGGAACGCTCTCCGTTCCGCATAAGTTCCGCTTGAATATTAATGATTACACGATACTG TTTAGTGACGTCATAAGCGG
Downstream 100 bases:
>100_bases AATGGAATTCCAGCAATACCCGGATGTTCGTCTGTCACTTCTTTACGTGGAGGATGAACCCGAGATCAGGGAGCTTCTCA GGAGTGTGTTGGTAAGGAAA
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 933; Mature: 933
Protein sequence:
>933_residues MKRGEPLKGEGKKLRIGEDTRSTGRNKQHSSRVKGSEEEISFLADLLEGSDQPFGIGYPDGRIGHVNGAFERLTGYSREE LRAMNWNSSLTPPEWLDRERAIREEICRTGESVRYEKEYIRKDGARIPVELLVHVKKDEAGSPLYYYSFITDITERKRLD NQIQRLSYFPQFNPNPIVETDYAGRVTVCNPATHKVLESIGAGADPGLFVPADLGTILHEWDGKSEASTICELSIGTRVF RETIFFTPQFPVVRIYVHDITDIRNAEKSLRENEERLRLFIEHAPAGLAMFDRDMRYLNVSRRWLTDYRLGDRDLRGLSH YEVFPEIPEEWKEAQRRGLAGEELRAEGDRFMRADGSLQWIRWEIHPWHDSSDQVAGIVIFSEDITESKKAEEKILLLNQ QLEQRAAESQLILDTSPIGLAIANDPQGVMIRGNPALEKLLGVTAGSELSKNAFNSAGYRVFKNGEAIAPSQLPMQRAAR GEPVSGETLDIVREDGTGLNLYCSAATLRDNEGKPCGAVGAFMDITERKELEDVVIKSQLDTYAILDNIPFNAWLKDTEG RYVKVNWQFATFCGYTSPKEVVGKTDMDLWPMHMAEAYCADDQDVMRSGQRKLIEEQVVEHGEERWFETFKAPRFDQNGT VIGTTGIAKDITEAKRAVEALQSIRNELEQKVAERTWELATALNDLRKESSDRIQALEALREQERLLIHQGRLAAMGEMI GNIAHQWRQPLNTLGLIIQGLSMSEELGELTKDHLDERVNRAMQLIYHMSQTIDDFRNFFRPDKEKVRFEMKQAINNALS LMGDNFRSLGIEVSCDSPQDMSIAGYPNEFSQALLNILMNARDVLQERKVEAPRVLVRLFAEDNRAVVTIADNGGGIDRE IIGKVFDPYFTSKGPSSGTGLGLFIAKTIIEKNMGGTLTVRNSGEGAEFRIEV
Sequences:
>Translated_933_residues MKRGEPLKGEGKKLRIGEDTRSTGRNKQHSSRVKGSEEEISFLADLLEGSDQPFGIGYPDGRIGHVNGAFERLTGYSREE LRAMNWNSSLTPPEWLDRERAIREEICRTGESVRYEKEYIRKDGARIPVELLVHVKKDEAGSPLYYYSFITDITERKRLD NQIQRLSYFPQFNPNPIVETDYAGRVTVCNPATHKVLESIGAGADPGLFVPADLGTILHEWDGKSEASTICELSIGTRVF RETIFFTPQFPVVRIYVHDITDIRNAEKSLRENEERLRLFIEHAPAGLAMFDRDMRYLNVSRRWLTDYRLGDRDLRGLSH YEVFPEIPEEWKEAQRRGLAGEELRAEGDRFMRADGSLQWIRWEIHPWHDSSDQVAGIVIFSEDITESKKAEEKILLLNQ QLEQRAAESQLILDTSPIGLAIANDPQGVMIRGNPALEKLLGVTAGSELSKNAFNSAGYRVFKNGEAIAPSQLPMQRAAR GEPVSGETLDIVREDGTGLNLYCSAATLRDNEGKPCGAVGAFMDITERKELEDVVIKSQLDTYAILDNIPFNAWLKDTEG RYVKVNWQFATFCGYTSPKEVVGKTDMDLWPMHMAEAYCADDQDVMRSGQRKLIEEQVVEHGEERWFETFKAPRFDQNGT VIGTTGIAKDITEAKRAVEALQSIRNELEQKVAERTWELATALNDLRKESSDRIQALEALREQERLLIHQGRLAAMGEMI GNIAHQWRQPLNTLGLIIQGLSMSEELGELTKDHLDERVNRAMQLIYHMSQTIDDFRNFFRPDKEKVRFEMKQAINNALS LMGDNFRSLGIEVSCDSPQDMSIAGYPNEFSQALLNILMNARDVLQERKVEAPRVLVRLFAEDNRAVVTIADNGGGIDRE IIGKVFDPYFTSKGPSSGTGLGLFIAKTIIEKNMGGTLTVRNSGEGAEFRIEV >Mature_933_residues MKRGEPLKGEGKKLRIGEDTRSTGRNKQHSSRVKGSEEEISFLADLLEGSDQPFGIGYPDGRIGHVNGAFERLTGYSREE LRAMNWNSSLTPPEWLDRERAIREEICRTGESVRYEKEYIRKDGARIPVELLVHVKKDEAGSPLYYYSFITDITERKRLD NQIQRLSYFPQFNPNPIVETDYAGRVTVCNPATHKVLESIGAGADPGLFVPADLGTILHEWDGKSEASTICELSIGTRVF RETIFFTPQFPVVRIYVHDITDIRNAEKSLRENEERLRLFIEHAPAGLAMFDRDMRYLNVSRRWLTDYRLGDRDLRGLSH YEVFPEIPEEWKEAQRRGLAGEELRAEGDRFMRADGSLQWIRWEIHPWHDSSDQVAGIVIFSEDITESKKAEEKILLLNQ QLEQRAAESQLILDTSPIGLAIANDPQGVMIRGNPALEKLLGVTAGSELSKNAFNSAGYRVFKNGEAIAPSQLPMQRAAR GEPVSGETLDIVREDGTGLNLYCSAATLRDNEGKPCGAVGAFMDITERKELEDVVIKSQLDTYAILDNIPFNAWLKDTEG RYVKVNWQFATFCGYTSPKEVVGKTDMDLWPMHMAEAYCADDQDVMRSGQRKLIEEQVVEHGEERWFETFKAPRFDQNGT VIGTTGIAKDITEAKRAVEALQSIRNELEQKVAERTWELATALNDLRKESSDRIQALEALREQERLLIHQGRLAAMGEMI GNIAHQWRQPLNTLGLIIQGLSMSEELGELTKDHLDERVNRAMQLIYHMSQTIDDFRNFFRPDKEKVRFEMKQAINNALS LMGDNFRSLGIEVSCDSPQDMSIAGYPNEFSQALLNILMNARDVLQERKVEAPRVLVRLFAEDNRAVVTIADNGGGIDRE IIGKVFDPYFTSKGPSSGTGLGLFIAKTIIEKNMGGTLTVRNSGEGAEFRIEV
Specific function: Putative oxygen sensor; modulates the activity of fixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates fixJ [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=277, Percent_Identity=27.4368231046931, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI1790436, Length=236, Percent_Identity=25.8474576271186, Blast_Score=73, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 105480; Mature: 105480
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRGEPLKGEGKKLRIGEDTRSTGRNKQHSSRVKGSEEEISFLADLLEGSDQPFGIGYPD CCCCCCCCCCCCEEEECCCHHHCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC GRIGHVNGAFERLTGYSREELRAMNWNSSLTPPEWLDRERAIREEICRTGESVRYEKEYI CCEECCCHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH RKDGARIPVELLVHVKKDEAGSPLYYYSFITDITERKRLDNQIQRLSYFPQFNPNPIVET HCCCCCCCHHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC DYAGRVTVCNPATHKVLESIGAGADPGLFVPADLGTILHEWDGKSEASTICELSIGTRVF CCCCEEEEECHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCCHHHEEEHHHHHHHH RETIFFTPQFPVVRIYVHDITDIRNAEKSLRENEERLRLFIEHAPAGLAMFDRDMRYLNV HHHHEECCCCCEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCHHHHHH SRRWLTDYRLGDRDLRGLSHYEVFPEIPEEWKEAQRRGLAGEELRAEGDRFMRADGSLQW HHHHHHHCCCCCHHHCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCEEECCCCEEE IRWEIHPWHDSSDQVAGIVIFSEDITESKKAEEKILLLNQQLEQRAAESQLILDTSPIGL EEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEE AIANDPQGVMIRGNPALEKLLGVTAGSELSKNAFNSAGYRVFKNGEAIAPSQLPMQRAAR EEECCCCEEEEECCHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCC GEPVSGETLDIVREDGTGLNLYCSAATLRDNEGKPCGAVGAFMDITERKELEDVVIKSQL CCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DTYAILDNIPFNAWLKDTEGRYVKVNWQFATFCGYTSPKEVVGKTDMDLWPMHMAEAYCA CHHHHHCCCCCCCEEECCCCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHCC DDQDVMRSGQRKLIEEQVVEHGEERWFETFKAPRFDQNGTVIGTTGIAKDITEAKRAVEA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHH LQSIRNELEQKVAERTWELATALNDLRKESSDRIQALEALREQERLLIHQGRLAAMGEMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GNIAHQWRQPLNTLGLIIQGLSMSEELGELTKDHLDERVNRAMQLIYHMSQTIDDFRNFF HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RPDKEKVRFEMKQAINNALSLMGDNFRSLGIEVSCDSPQDMSIAGYPNEFSQALLNILMN CCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCEECCCCHHHHHHHHHHHHH ARDVLQERKVEAPRVLVRLFAEDNRAVVTIADNGGGIDREIIGKVFDPYFTSKGPSSGTG HHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCHHCCCCCCCCCC LGLFIAKTIIEKNMGGTLTVRNSGEGAEFRIEV HHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEC >Mature Secondary Structure MKRGEPLKGEGKKLRIGEDTRSTGRNKQHSSRVKGSEEEISFLADLLEGSDQPFGIGYPD CCCCCCCCCCCCEEEECCCHHHCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC GRIGHVNGAFERLTGYSREELRAMNWNSSLTPPEWLDRERAIREEICRTGESVRYEKEYI CCEECCCHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH RKDGARIPVELLVHVKKDEAGSPLYYYSFITDITERKRLDNQIQRLSYFPQFNPNPIVET HCCCCCCCHHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC DYAGRVTVCNPATHKVLESIGAGADPGLFVPADLGTILHEWDGKSEASTICELSIGTRVF CCCCEEEEECHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCCHHHEEEHHHHHHHH RETIFFTPQFPVVRIYVHDITDIRNAEKSLRENEERLRLFIEHAPAGLAMFDRDMRYLNV HHHHEECCCCCEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCHHHHHH SRRWLTDYRLGDRDLRGLSHYEVFPEIPEEWKEAQRRGLAGEELRAEGDRFMRADGSLQW HHHHHHHCCCCCHHHCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCEEECCCCEEE IRWEIHPWHDSSDQVAGIVIFSEDITESKKAEEKILLLNQQLEQRAAESQLILDTSPIGL EEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEE AIANDPQGVMIRGNPALEKLLGVTAGSELSKNAFNSAGYRVFKNGEAIAPSQLPMQRAAR EEECCCCEEEEECCHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCC GEPVSGETLDIVREDGTGLNLYCSAATLRDNEGKPCGAVGAFMDITERKELEDVVIKSQL CCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DTYAILDNIPFNAWLKDTEGRYVKVNWQFATFCGYTSPKEVVGKTDMDLWPMHMAEAYCA CHHHHHCCCCCCCEEECCCCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHCC DDQDVMRSGQRKLIEEQVVEHGEERWFETFKAPRFDQNGTVIGTTGIAKDITEAKRAVEA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHH LQSIRNELEQKVAERTWELATALNDLRKESSDRIQALEALREQERLLIHQGRLAAMGEMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GNIAHQWRQPLNTLGLIIQGLSMSEELGELTKDHLDERVNRAMQLIYHMSQTIDDFRNFF HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RPDKEKVRFEMKQAINNALSLMGDNFRSLGIEVSCDSPQDMSIAGYPNEFSQALLNILMN CCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCEECCCCHHHHHHHHHHHHH ARDVLQERKVEAPRVLVRLFAEDNRAVVTIADNGGGIDREIIGKVFDPYFTSKGPSSGTG HHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCHHCCCCCCCCCC LGLFIAKTIIEKNMGGTLTVRNSGEGAEFRIEV HHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2046550; 1766374 [H]