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The map label for this gene is bphB [H]

Identifier: 78222427

GI number: 78222427

Start: 1359697

End: 1361073

Strand: Direct

Name: bphB [H]

Synonym: Gmet_1212

Alternate gene names: 78222427

Gene position: 1359697-1361073 (Clockwise)

Preceding gene: 78222426

Following gene: 78222430

Centisome position: 34.01

GC content: 59.55

Gene sequence:

>1377_bases
ATGCCGTACCGTCGCCAGGACACTCTCCCCGAAATCGGCCGTTCCGATTCAGAGGCCACGAGATGGAGTGCCGCAAAAAT
TGTCGTCGTCTATCTCTCGTTCGGCATTGTCTGGATGCTTGCCACCGTCACCTGGATGGGGTTCGGAGCGGCAATGGTGT
GGCAGGCGCTCTTTATCCTGCTGTCCGCCGGTCTGGTGGCAATTCTTGTGCGTCATCTCACGGGGGAGTTGGAACGGATC
CGGAGTCTGCTGCGGGATGGCGAGCGCCGCTACTATCAACTGGCCGAACTCCTGCCACAGCCGGTCTATGAGGCAGATCC
GGACGGACGCATCACCTTCGCCAACCGCAAGGCATTCACGGCCTTCGGTTTTACCGAGGAAGACTTCGCCCAGGGGATAA
ACATTCTGAAAGCAGTTGCTCCCCACGATCAGGACCGGGCCCACCAAAGCCGCGTCGGCCTCCTTGCCGGTGTTCACGAT
CCAGGAACCGCTACCCAGTATACGGTCCGCCGCAAGGACGGGAGCACGTTTCCTGCAATCGTCTGCACTGCTCCCCTCAT
CAGGAGAGGAAACGCCGTCGGCACTTGCGGCGTCGTGGCCGACATCAGCGAACAGAAACAGAGAGAAGCGGAGATATCCC
GCCTGAACCTGGAACTGGAGCAGCGGGTTCAGGAGCGCACTGCCGAGCTCGCATCGGCCCTGAAACACATGGAATCGTTC
TCCTATTCCATTTCCCACGACCTGCGGGCACCGCTCTGTGCCATTGAGGGGTTTTCCCGCGTTCTCATTGAGGATTTTGG
CGAGCAACTCCCTCCCCGGATGCTCCTGTACCTTCAGCGAATATCCCACAACGTCCATCGGATGGCCTCCCTCATCGACG
ACATTCTGGTCTTCTCCCGCTACAGCCTCTCCCCGCTTCAAAAGCGCCCAGTTCAGATCGCGGACCTGGTACGTGCAATT
CTGGATGAACTCCTGAACGGGCAAGACGACCGCCGTGTGCAGGTGACGGTCGGTGATCTGCCTCCCTGTGAGTCTGATCC
GACCCTCCTGCGGCAGGTTCTGTTCAACCTGCTGGACAATGCACTCAAGTATAGCCGCTACCGGGATCCGGCAATAATTG
AGGTCAACGCGGTGATGGACGGACCGGTGCCCGTCTATTTTGTCCGGGACAACGGCGCCGGCTTTGACATGGAATACGTC
CACAAGCTGTTTTCCGTCTTCGAGAGGTTGCATGGGCGGGAGGAGTTCGAGGGAACCGGCGTCGGATTGGCAATTGTGCA
GAACATCATCCAGCGGCACGGGGGCGACGTTTGGGCCGAGGGGGCCGTCGGCCAAGGCTCTACCTTTTACTTTACGCTGC
CGTCGGCGCCGAATTGA

Upstream 100 bases:

>100_bases
TTATGGTATATGATTTGAGGATTGTAATAACTGCATGTCCATGAAATAATACTTCATTTTTGATCGCCGTACTGTATCCG
GACACCCCCGGGAGGAATAG

Downstream 100 bases:

>100_bases
ATTACCGCACCCCTTCCGCCCGCAGCAGATGCACCGCCCCGGCCTCGTCACCAGTGACGACGGTTTTGCCGTCGGGCGTG
ATGGCGGCTGGTACCAGCGC

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MPYRRQDTLPEIGRSDSEATRWSAAKIVVVYLSFGIVWMLATVTWMGFGAAMVWQALFILLSAGLVAILVRHLTGELERI
RSLLRDGERRYYQLAELLPQPVYEADPDGRITFANRKAFTAFGFTEEDFAQGINILKAVAPHDQDRAHQSRVGLLAGVHD
PGTATQYTVRRKDGSTFPAIVCTAPLIRRGNAVGTCGVVADISEQKQREAEISRLNLELEQRVQERTAELASALKHMESF
SYSISHDLRAPLCAIEGFSRVLIEDFGEQLPPRMLLYLQRISHNVHRMASLIDDILVFSRYSLSPLQKRPVQIADLVRAI
LDELLNGQDDRRVQVTVGDLPPCESDPTLLRQVLFNLLDNALKYSRYRDPAIIEVNAVMDGPVPVYFVRDNGAGFDMEYV
HKLFSVFERLHGREEFEGTGVGLAIVQNIIQRHGGDVWAEGAVGQGSTFYFTLPSAPN

Sequences:

>Translated_458_residues
MPYRRQDTLPEIGRSDSEATRWSAAKIVVVYLSFGIVWMLATVTWMGFGAAMVWQALFILLSAGLVAILVRHLTGELERI
RSLLRDGERRYYQLAELLPQPVYEADPDGRITFANRKAFTAFGFTEEDFAQGINILKAVAPHDQDRAHQSRVGLLAGVHD
PGTATQYTVRRKDGSTFPAIVCTAPLIRRGNAVGTCGVVADISEQKQREAEISRLNLELEQRVQERTAELASALKHMESF
SYSISHDLRAPLCAIEGFSRVLIEDFGEQLPPRMLLYLQRISHNVHRMASLIDDILVFSRYSLSPLQKRPVQIADLVRAI
LDELLNGQDDRRVQVTVGDLPPCESDPTLLRQVLFNLLDNALKYSRYRDPAIIEVNAVMDGPVPVYFVRDNGAGFDMEYV
HKLFSVFERLHGREEFEGTGVGLAIVQNIIQRHGGDVWAEGAVGQGSTFYFTLPSAPN
>Mature_457_residues
PYRRQDTLPEIGRSDSEATRWSAAKIVVVYLSFGIVWMLATVTWMGFGAAMVWQALFILLSAGLVAILVRHLTGELERIR
SLLRDGERRYYQLAELLPQPVYEADPDGRITFANRKAFTAFGFTEEDFAQGINILKAVAPHDQDRAHQSRVGLLAGVHDP
GTATQYTVRRKDGSTFPAIVCTAPLIRRGNAVGTCGVVADISEQKQREAEISRLNLELEQRVQERTAELASALKHMESFS
YSISHDLRAPLCAIEGFSRVLIEDFGEQLPPRMLLYLQRISHNVHRMASLIDDILVFSRYSLSPLQKRPVQIADLVRAIL
DELLNGQDDRRVQVTVGDLPPCESDPTLLRQVLFNLLDNALKYSRYRDPAIIEVNAVMDGPVPVYFVRDNGAGFDMEYVH
KLFSVFERLHGREEFEGTGVGLAIVQNIIQRHGGDVWAEGAVGQGSTFYFTLPSAPN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=260, Percent_Identity=28.0769230769231, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693157, Length=276, Percent_Identity=28.9855072463768, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788549, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI48994928, Length=276, Percent_Identity=26.8115942028986, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1786783, Length=249, Percent_Identity=29.3172690763052, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=28.3400809716599, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081816, Length=268, Percent_Identity=29.8507462686567, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1790346, Length=236, Percent_Identity=30.5084745762712, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786912, Length=233, Percent_Identity=28.3261802575107, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788713, Length=283, Percent_Identity=25.4416961130742, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786600, Length=221, Percent_Identity=24.8868778280543, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789808, Length=196, Percent_Identity=26.530612244898, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790861, Length=217, Percent_Identity=26.2672811059908, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 51298; Mature: 51167

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYRRQDTLPEIGRSDSEATRWSAAKIVVVYLSFGIVWMLATVTWMGFGAAMVWQALFIL
CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LSAGLVAILVRHLTGELERIRSLLRDGERRYYQLAELLPQPVYEADPDGRITFANRKAFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEE
AFGFTEEDFAQGINILKAVAPHDQDRAHQSRVGLLAGVHDPGTATQYTVRRKDGSTFPAI
ECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCCCHH
VCTAPLIRRGNAVGTCGVVADISEQKQREAEISRLNLELEQRVQERTAELASALKHMESF
HHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYSISHDLRAPLCAIEGFSRVLIEDFGEQLPPRMLLYLQRISHNVHRMASLIDDILVFSR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSLSPLQKRPVQIADLVRAILDELLNGQDDRRVQVTVGDLPPCESDPTLLRQVLFNLLDN
CCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
ALKYSRYRDPAIIEVNAVMDGPVPVYFVRDNGAGFDMEYVHKLFSVFERLHGREEFEGTG
HHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
VGLAIVQNIIQRHGGDVWAEGAVGQGSTFYFTLPSAPN
HHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
PYRRQDTLPEIGRSDSEATRWSAAKIVVVYLSFGIVWMLATVTWMGFGAAMVWQALFIL
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LSAGLVAILVRHLTGELERIRSLLRDGERRYYQLAELLPQPVYEADPDGRITFANRKAFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEE
AFGFTEEDFAQGINILKAVAPHDQDRAHQSRVGLLAGVHDPGTATQYTVRRKDGSTFPAI
ECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCCCHH
VCTAPLIRRGNAVGTCGVVADISEQKQREAEISRLNLELEQRVQERTAELASALKHMESF
HHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYSISHDLRAPLCAIEGFSRVLIEDFGEQLPPRMLLYLQRISHNVHRMASLIDDILVFSR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSLSPLQKRPVQIADLVRAILDELLNGQDDRRVQVTVGDLPPCESDPTLLRQVLFNLLDN
CCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
ALKYSRYRDPAIIEVNAVMDGPVPVYFVRDNGAGFDMEYVHKLFSVFERLHGREEFEGTG
HHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
VGLAIVQNIIQRHGGDVWAEGAVGQGSTFYFTLPSAPN
HHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]