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The map label for this gene is ymdC [H]

Identifier: 78067548

GI number: 78067548

Start: 3220623

End: 3222248

Strand: Reverse

Name: ymdC [H]

Synonym: Bcep18194_A6079

Alternate gene names: 78067548

Gene position: 3222248-3220623 (Counterclockwise)

Preceding gene: 78067549

Following gene: 78067547

Centisome position: 87.23

GC content: 68.94

Gene sequence:

>1626_bases
GTGTTCACCTCTTTGATCCGGCGCGCATCGGCCGCGCTGTCGTGGCGCGCCGCATGCCGCCCGGCCCGTGCGCTGGCCGC
CGGCGCACTGCTGTCGCTCGTTGCCGCCTGCGCGACGCATCCGCCCGCCACGACGCTCGAGCGCCCGGTCTCCCACGCGT
TGCCGCCCGATACCGCGACGCCGCTGCACGACGCGCTGGCCGCGCCCGAGGCCGCGCATCCGGGCCAGTCCGGTTTCCGG
CTGCTGCCGGAAGGCGCCGAGGCGCTGCAGATGCGCATCGCGCTCGCACGGGCCGCGACGAAGACGCTCGACATGCAGTA
CTACATCGCGACCGAGGACACCACCGGCAAGCTGCTGCTCGCCGCTGCGCTGTACGCGGCCGATCGCGGCGTGCGCGTGC
GGATGCTGGTCGACGACCTGAATTTCCGCGACATCGATCGCATCATGGCCGCACTGAACACGCACCCGAACATCGAGATC
CGCGTGTTCAACCCGTTCGGCGCGACGCAGCACGGCATGGTCGAGCGCACGGCCAACTTCTTCACGCGCATCGACAGCTT
CACGCGCCGGATGCACAACAAGGCGATGATCGCGGACAACCAGATCGCGATCGTCGGCGGCCGCAATCTCGGCGACGAAT
ACTTCAGCGCGAGCCCGACGCTGCAGTTCCGCGATCTCGACGTGCTGGCCGCCGGCCCCGTGACGAACGACGTCTCGGCG
AGCTTCGACACGTACTGGTCGAGCGCGAGCAGCTATCCGCTGAGTGTGCTGAATCACCAGTCGTTCGATCCGAAGGACCT
CGACGCGACGCGCGACGAGCTGCGCAGCCATTGGCGCCAGAACGCCGAACCGTACAACGCGAAGCCGCTGAACGCGACGC
CGCTCGCGCAGCAGATTGCGCGCGACGAGCTCGCGCTCGTATGGGCGCCGGCCGAGTTCAAGGTCGACGCGCCCGACAAG
GTCGCGCGGCCGACCGACGCATACGTGAGCCCGCCGATGCAGCGCCTCGTCGAGCTCACGCGCGGCGCGCAGCAGGAATT
CCTCGCGTTCTCGCCGTATTTCGTGCCGCACGACGCGGGCGTGAAGATCCTCGGCGAGACGACCGCACGCGGCGTGCGGG
TCGCGATTCTCACCAATTCGCTCGCCGCGACCGATGCGGTCGCCGTGCAGGCTGGCTACGGGCCGTATCGCGTGCCGCTG
CTGCAGCACGGCGTCGAGCTGTACGAGTTCAAGGCCCAGCCGGGCCGGCAGCGCGCGCGCCTGTTCGGGTCGCGCTCGCG
GGCGAGCCTGCATGCGAAGGCGTACGTGATCGACCGGAAGATCCTCGTGATCGGCTCGATGAACCTCGATCCGCGGTCCG
CGCACCTGAATACCGAACTGGCGCTCGTTATCCACAGCCCGGCGCTCGCACAGCAGGTCGCGACGATCTTCGCGCGCGTG
ACGCAGCCGGACGACAGCTACCGCGTGAGTCTCGTGACGCCGGCGAACGGCGGGTCGCCCGAACTCGAATGGACGGGCAT
CGACGACGGCCGGCCGACCACCTATCACGTCGATCCGCATGCGGGGCTGCTGCGCAACCTGATGACCGGCATGTTCATGC
TGCTGCCGGTCGACGACCAGCTTTAA

Upstream 100 bases:

>100_bases
ACCGGTTCATCGGGCGCCCTCTAGAATCGGCCGGAACCGCGCGCCAGCCGCGCGTCGCGGCGCATGCGGGCCCTTTGTTC
CGCCAGTCGAGGAAGTTTCC

Downstream 100 bases:

>100_bases
GGGGACGGAAGCGCTCCGGCTAAACCCGCGTTTCCGGTGCGCGGGGAATGGTGATATGGTTGTGCGCGCAACTAATGTGG
CGCGCAAGTCGGTGCCGCCA

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MFTSLIRRASAALSWRAACRPARALAAGALLSLVAACATHPPATTLERPVSHALPPDTATPLHDALAAPEAAHPGQSGFR
LLPEGAEALQMRIALARAATKTLDMQYYIATEDTTGKLLLAAALYAADRGVRVRMLVDDLNFRDIDRIMAALNTHPNIEI
RVFNPFGATQHGMVERTANFFTRIDSFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASPTLQFRDLDVLAAGPVTNDVSA
SFDTYWSSASSYPLSVLNHQSFDPKDLDATRDELRSHWRQNAEPYNAKPLNATPLAQQIARDELALVWAPAEFKVDAPDK
VARPTDAYVSPPMQRLVELTRGAQQEFLAFSPYFVPHDAGVKILGETTARGVRVAILTNSLAATDAVAVQAGYGPYRVPL
LQHGVELYEFKAQPGRQRARLFGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPALAQQVATIFARV
TQPDDSYRVSLVTPANGGSPELEWTGIDDGRPTTYHVDPHAGLLRNLMTGMFMLLPVDDQL

Sequences:

>Translated_541_residues
MFTSLIRRASAALSWRAACRPARALAAGALLSLVAACATHPPATTLERPVSHALPPDTATPLHDALAAPEAAHPGQSGFR
LLPEGAEALQMRIALARAATKTLDMQYYIATEDTTGKLLLAAALYAADRGVRVRMLVDDLNFRDIDRIMAALNTHPNIEI
RVFNPFGATQHGMVERTANFFTRIDSFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASPTLQFRDLDVLAAGPVTNDVSA
SFDTYWSSASSYPLSVLNHQSFDPKDLDATRDELRSHWRQNAEPYNAKPLNATPLAQQIARDELALVWAPAEFKVDAPDK
VARPTDAYVSPPMQRLVELTRGAQQEFLAFSPYFVPHDAGVKILGETTARGVRVAILTNSLAATDAVAVQAGYGPYRVPL
LQHGVELYEFKAQPGRQRARLFGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPALAQQVATIFARV
TQPDDSYRVSLVTPANGGSPELEWTGIDDGRPTTYHVDPHAGLLRNLMTGMFMLLPVDDQL
>Mature_541_residues
MFTSLIRRASAALSWRAACRPARALAAGALLSLVAACATHPPATTLERPVSHALPPDTATPLHDALAAPEAAHPGQSGFR
LLPEGAEALQMRIALARAATKTLDMQYYIATEDTTGKLLLAAALYAADRGVRVRMLVDDLNFRDIDRIMAALNTHPNIEI
RVFNPFGATQHGMVERTANFFTRIDSFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASPTLQFRDLDVLAAGPVTNDVSA
SFDTYWSSASSYPLSVLNHQSFDPKDLDATRDELRSHWRQNAEPYNAKPLNATPLAQQIARDELALVWAPAEFKVDAPDK
VARPTDAYVSPPMQRLVELTRGAQQEFLAFSPYFVPHDAGVKILGETTARGVRVAILTNSLAATDAVAVQAGYGPYRVPL
LQHGVELYEFKAQPGRQRARLFGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPALAQQVATIFARV
TQPDDSYRVSLVTPANGGSPELEWTGIDDGRPTTYHVDPHAGLLRNLMTGMFMLLPVDDQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=475, Percent_Identity=38.1052631578947, Blast_Score=281, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59110; Mature: 59110

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTSLIRRASAALSWRAACRPARALAAGALLSLVAACATHPPATTLERPVSHALPPDTAT
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
PLHDALAAPEAAHPGQSGFRLLPEGAEALQMRIALARAATKTLDMQYYIATEDTTGKLLL
CHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHH
AAALYAADRGVRVRMLVDDLNFRDIDRIMAALNTHPNIEIRVFNPFGATQHGMVERTANF
HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH
FTRIDSFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASPTLQFRDLDVLAAGPVTNDVSA
HHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHCCCCCEEEECCEEEECCCCCCCCCC
SFDTYWSSASSYPLSVLNHQSFDPKDLDATRDELRSHWRQNAEPYNAKPLNATPLAQQIA
CHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
RDELALVWAPAEFKVDAPDKVARPTDAYVSPPMQRLVELTRGAQQEFLAFSPYFVPHDAG
CCCEEEEEECCCEEECCCHHHCCCCCCCCCCHHHHHHHHHCCCHHHHEEECCEECCCCCC
VKILGETTARGVRVAILTNSLAATDAVAVQAGYGPYRVPLLQHGVELYEFKAQPGRQRAR
CEEEECCCCCCEEEEEEECCCHHCCEEEEEECCCCEECHHHHCCCEEEEECCCCCHHHHH
LFGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPALAQQVATIFARV
HHCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
TQPDDSYRVSLVTPANGGSPELEWTGIDDGRPTTYHVDPHAGLLRNLMTGMFMLLPVDDQ
CCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHCEEEEEECCCC
L
C
>Mature Secondary Structure
MFTSLIRRASAALSWRAACRPARALAAGALLSLVAACATHPPATTLERPVSHALPPDTAT
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
PLHDALAAPEAAHPGQSGFRLLPEGAEALQMRIALARAATKTLDMQYYIATEDTTGKLLL
CHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHH
AAALYAADRGVRVRMLVDDLNFRDIDRIMAALNTHPNIEIRVFNPFGATQHGMVERTANF
HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH
FTRIDSFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASPTLQFRDLDVLAAGPVTNDVSA
HHHHHHHHHHHCCCEEEECCEEEEEECCCCCHHHHCCCCCEEEECCEEEECCCCCCCCCC
SFDTYWSSASSYPLSVLNHQSFDPKDLDATRDELRSHWRQNAEPYNAKPLNATPLAQQIA
CHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
RDELALVWAPAEFKVDAPDKVARPTDAYVSPPMQRLVELTRGAQQEFLAFSPYFVPHDAG
CCCEEEEEECCCEEECCCHHHCCCCCCCCCCHHHHHHHHHCCCHHHHEEECCEECCCCCC
VKILGETTARGVRVAILTNSLAATDAVAVQAGYGPYRVPLLQHGVELYEFKAQPGRQRAR
CEEEECCCCCCEEEEEEECCCHHCCEEEEEECCCCEECHHHHCCCEEEEECCCCCHHHHH
LFGSRSRASLHAKAYVIDRKILVIGSMNLDPRSAHLNTELALVIHSPALAQQVATIFARV
HHCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
TQPDDSYRVSLVTPANGGSPELEWTGIDDGRPTTYHVDPHAGLLRNLMTGMFMLLPVDDQ
CCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHCEEEEEECCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]