| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is aspC [H]
Identifier: 78067008
GI number: 78067008
Start: 2633156
End: 2634355
Strand: Direct
Name: aspC [H]
Synonym: Bcep18194_A5539
Alternate gene names: 78067008
Gene position: 2633156-2634355 (Clockwise)
Preceding gene: 78067002
Following gene: 78067010
Centisome position: 71.28
GC content: 64.5
Gene sequence:
>1200_bases ATGTCGCTCTTCTCCGCTGTCCAGCTTGCTCCCCGCGACCCGATCCTGGGCCTGAACGAAGCCTTCAACGCCGATGCGCG TCCGACCAAGGTCAACCTCGGCGTCGGTGTGTACACGAACGAAGAAGGCAAGATTCCGCTGCTGCGCGCGGTTCGCGAAG CAGAGAAGGTGCGTGTCGACGCCGGCCTGCCCCGCGGCTACCTGCCGATCGACGGCATCGCTGCCTACGACGCGGCCGTG CAGAAGCTGCTGCTCGGCAACGACTCGCCGCTGATCGCAGCTGGTCGCGTGGTCACGGCCCAGGCGCTGGGCGGCACGGG CGCACTGAAGATCGGCGCCGATTTCCTGCGCACCGTGAACCCGAACGTGAAGGTCGCGATTAGCGATCCGAGCTGGGAAA ACCACCGCGCGCTGTTCGAAGCAGCCGGTTTCGAAGTCGTTGCGTACCCGTATTACGACGCTGCCACCAATGGCGTGAAC TTCGAAGGCATGCTGTCGGCACTGAATAGCTACGCGGCAGGTACGGTCGTCGTGCTGCACGCGTGCTGCCACAACCCGAC CGGCGTGGACCTGACCGAAGCGCAATGGCAACAGGTCGTCGACGTCGTGAAGGCGCGCAACCTCGTGCCGTTCCTCGACA TGGCCTACCAGGGCTTCGGCGAGAACATCGAGGCCGATGCTGCTGCCGTGCGCCTGTTTGCCGCGGCTGACCTGAACGCA TTCGTGTCGTCGTCGTTCTCGAAGTCGTTCTCGCTGTATGGCGAGCGCGTCGGCGCACTGTCGATCATCACGTCGAGCAA GGAAGAGGCGACGCGCGTGCTGTCGCAACTGAAGCGCGTGATCCGCACGAACTACTCGAACCCGCCGACCCATGGCGGCG CCGTGGTCGCAGCGGTGCTCGCATCGCCGGAACTGCACGCTTCGTGGGTGCAGGAACTCGGTGAAATGCGCGATCGTATC CGCTCGATGCGCAATGGTCTCGTCGAGCGCCTGAAGGCAAGCGGCGTCGATCGCGACTTCAGCTTCATCAACGAGCAGCG CGGGATGTTCTCGTATTCGGGCCTGACCTCGGCGCAAGTCGATCGCCTGCGCGACGAGTTCGGCATCTACGCAGTCGGCA CGGGCCGGATCTGCGTCGCAGCACTGAACACGCGCAACCTCGACGCGGTCGCCAATGCGGTCGCAGCCGTCCTGAAGTAA
Upstream 100 bases:
>100_bases GCTGCTGCGCTTTCCGGCGTCGTGCCTGCCCGCGCGCGGTCCACCGCGACCGCCCCGCCAGTTGAAAGCCTGACCCTCTT TTCACTACTGCAGAATCATC
Downstream 100 bases:
>100_bases CGCGGCTTGAGCGGGTGGCAGCCGTCATCGGCCCCGCCCTGCCAAAATAGAAACGCGCTCTACGGAGCGCGTTTTTTTAT GCCATTCGCCGGCGGGCAAC
Product: aromatic amino acid aminotransferase
Products: NA
Alternate protein names: AspAT; Transaminase A [H]
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MSLFSAVQLAPRDPILGLNEAFNADARPTKVNLGVGVYTNEEGKIPLLRAVREAEKVRVDAGLPRGYLPIDGIAAYDAAV QKLLLGNDSPLIAAGRVVTAQALGGTGALKIGADFLRTVNPNVKVAISDPSWENHRALFEAAGFEVVAYPYYDAATNGVN FEGMLSALNSYAAGTVVVLHACCHNPTGVDLTEAQWQQVVDVVKARNLVPFLDMAYQGFGENIEADAAAVRLFAAADLNA FVSSSFSKSFSLYGERVGALSIITSSKEEATRVLSQLKRVIRTNYSNPPTHGGAVVAAVLASPELHASWVQELGEMRDRI RSMRNGLVERLKASGVDRDFSFINEQRGMFSYSGLTSAQVDRLRDEFGIYAVGTGRICVAALNTRNLDAVANAVAAVLK
Sequences:
>Translated_399_residues MSLFSAVQLAPRDPILGLNEAFNADARPTKVNLGVGVYTNEEGKIPLLRAVREAEKVRVDAGLPRGYLPIDGIAAYDAAV QKLLLGNDSPLIAAGRVVTAQALGGTGALKIGADFLRTVNPNVKVAISDPSWENHRALFEAAGFEVVAYPYYDAATNGVN FEGMLSALNSYAAGTVVVLHACCHNPTGVDLTEAQWQQVVDVVKARNLVPFLDMAYQGFGENIEADAAAVRLFAAADLNA FVSSSFSKSFSLYGERVGALSIITSSKEEATRVLSQLKRVIRTNYSNPPTHGGAVVAAVLASPELHASWVQELGEMRDRI RSMRNGLVERLKASGVDRDFSFINEQRGMFSYSGLTSAQVDRLRDEFGIYAVGTGRICVAALNTRNLDAVANAVAAVLK >Mature_398_residues SLFSAVQLAPRDPILGLNEAFNADARPTKVNLGVGVYTNEEGKIPLLRAVREAEKVRVDAGLPRGYLPIDGIAAYDAAVQ KLLLGNDSPLIAAGRVVTAQALGGTGALKIGADFLRTVNPNVKVAISDPSWENHRALFEAAGFEVVAYPYYDAATNGVNF EGMLSALNSYAAGTVVVLHACCHNPTGVDLTEAQWQQVVDVVKARNLVPFLDMAYQGFGENIEADAAAVRLFAAADLNAF VSSSFSKSFSLYGERVGALSIITSSKEEATRVLSQLKRVIRTNYSNPPTHGGAVVAAVLASPELHASWVQELGEMRDRIR SMRNGLVERLKASGVDRDFSFINEQRGMFSYSGLTSAQVDRLRDEFGIYAVGTGRICVAALNTRNLDAVANAVAAVLK
Specific function: Biosynthesis of Phe, Tyr, Asp and Leu. [C]
COG id: COG1448
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI73486658, Length=398, Percent_Identity=43.7185929648241, Blast_Score=341, Evalue=9e-94, Organism=Homo sapiens, GI4504067, Length=401, Percent_Identity=43.640897755611, Blast_Score=335, Evalue=6e-92, Organism=Homo sapiens, GI117414139, Length=399, Percent_Identity=28.0701754385965, Blast_Score=176, Evalue=5e-44, Organism=Escherichia coli, GI1790488, Length=399, Percent_Identity=54.3859649122807, Blast_Score=435, Evalue=1e-123, Organism=Escherichia coli, GI1787159, Length=396, Percent_Identity=47.7272727272727, Blast_Score=396, Evalue=1e-111, Organism=Caenorhabditis elegans, GI71981858, Length=400, Percent_Identity=43, Blast_Score=353, Evalue=9e-98, Organism=Caenorhabditis elegans, GI25147133, Length=399, Percent_Identity=42.1052631578947, Blast_Score=336, Evalue=1e-92, Organism=Caenorhabditis elegans, GI17569539, Length=402, Percent_Identity=40.2985074626866, Blast_Score=307, Evalue=6e-84, Organism=Caenorhabditis elegans, GI17569537, Length=396, Percent_Identity=33.5858585858586, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI25147136, Length=213, Percent_Identity=41.7840375586854, Blast_Score=186, Evalue=2e-47, Organism=Caenorhabditis elegans, GI17550384, Length=269, Percent_Identity=34.5724907063197, Blast_Score=180, Evalue=2e-45, Organism=Saccharomyces cerevisiae, GI6323055, Length=408, Percent_Identity=37.9901960784314, Blast_Score=297, Evalue=2e-81, Organism=Saccharomyces cerevisiae, GI6322743, Length=436, Percent_Identity=32.7981651376147, Blast_Score=244, Evalue=2e-65, Organism=Drosophila melanogaster, GI24580972, Length=400, Percent_Identity=42.5, Blast_Score=327, Evalue=8e-90, Organism=Drosophila melanogaster, GI24580970, Length=400, Percent_Identity=42.5, Blast_Score=327, Evalue=1e-89, Organism=Drosophila melanogaster, GI19920542, Length=393, Percent_Identity=42.2391857506361, Blast_Score=319, Evalue=2e-87, Organism=Drosophila melanogaster, GI24654046, Length=402, Percent_Identity=40.547263681592, Blast_Score=311, Evalue=7e-85, Organism=Drosophila melanogaster, GI19922362, Length=402, Percent_Identity=40.547263681592, Blast_Score=311, Evalue=7e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000796 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.1 [H]
Molecular weight: Translated: 42694; Mature: 42563
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFSAVQLAPRDPILGLNEAFNADARPTKVNLGVGVYTNEEGKIPLLRAVREAEKVRVD CCHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHEEEC AGLPRGYLPIDGIAAYDAAVQKLLLGNDSPLIAAGRVVTAQALGGTGALKIGADFLRTVN CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEHHHHHHHHHCC PNVKVAISDPSWENHRALFEAAGFEVVAYPYYDAATNGVNFEGMLSALNSYAAGTVVVLH CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH ACCHNPTGVDLTEAQWQQVVDVVKARNLVPFLDMAYQGFGENIEADAAAVRLFAAADLNA HHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH FVSSSFSKSFSLYGERVGALSIITSSKEEATRVLSQLKRVIRTNYSNPPTHGGAVVAAVL HHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH ASPELHASWVQELGEMRDRIRSMRNGLVERLKASGVDRDFSFINEQRGMFSYSGLTSAQV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCCCHHHH DRLRDEFGIYAVGTGRICVAALNTRNLDAVANAVAAVLK HHHHHHCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHC >Mature Secondary Structure SLFSAVQLAPRDPILGLNEAFNADARPTKVNLGVGVYTNEEGKIPLLRAVREAEKVRVD CHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHEEEC AGLPRGYLPIDGIAAYDAAVQKLLLGNDSPLIAAGRVVTAQALGGTGALKIGADFLRTVN CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEHHHHHHHHHCC PNVKVAISDPSWENHRALFEAAGFEVVAYPYYDAATNGVNFEGMLSALNSYAAGTVVVLH CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH ACCHNPTGVDLTEAQWQQVVDVVKARNLVPFLDMAYQGFGENIEADAAAVRLFAAADLNA HHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH FVSSSFSKSFSLYGERVGALSIITSSKEEATRVLSQLKRVIRTNYSNPPTHGGAVVAAVL HHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH ASPELHASWVQELGEMRDRIRSMRNGLVERLKASGVDRDFSFINEQRGMFSYSGLTSAQV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEECCCCHHHH DRLRDEFGIYAVGTGRICVAALNTRNLDAVANAVAAVLK HHHHHHCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 8808952 [H]