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The map label for this gene is hfq

Identifier: 78066577

GI number: 78066577

Start: 2150683

End: 2150922

Strand: Reverse

Name: hfq

Synonym: Bcep18194_A5108

Alternate gene names: 78066577

Gene position: 2150922-2150683 (Counterclockwise)

Preceding gene: 78066578

Following gene: 78066576

Centisome position: 58.23

GC content: 53.75

Gene sequence:

>240_bases
ATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGCAAAGAGCACGTTCCCGTTTCGATCTACCT
CGTCAATGGCATCAAGCTGCAAGGGAACATTGAATCGTTCGACCAGTACGTCGTGTTGCTCCGTAATACGGTGACCCAGA
TGGTGTACAAGCACGCCATCTCGACGGTCGTGCCGGCGCGTCCGGTGAATTTCCACCCGGACGCTGAAGCCTCGTCCTAA

Upstream 100 bases:

>100_bases
GCGGGCCAGGCAAAATCGGCTATAGTGTAGCGATTGGCGCCGGATCTCTTTTTCTTCGCCGCCAGTCCAGATCAACCTGC
AAAAAAAGATGGAGTACGCC

Downstream 100 bases:

>100_bases
CCTATCGCAGCGGCCGGCATCCGGTCGCCGCGAGCGACCGATGCCAGCCGCCTTATCTTGACACCTGAAAATTTGATCAA
CGCAGCGCTCGTCGGCATCG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS

Sequences:

>Translated_79_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS
>Mature_78_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAEASS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=71, Percent_Identity=81.6901408450704, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8849; Mature: 8718

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEASS
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDAEASS
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA