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The map label for this gene is 78065856

Identifier: 78065856

GI number: 78065856

Start: 1342385

End: 1343527

Strand: Reverse

Name: 78065856

Synonym: Bcep18194_A4385

Alternate gene names: NA

Gene position: 1343527-1342385 (Counterclockwise)

Preceding gene: 78065857

Following gene: 78065849

Centisome position: 36.37

GC content: 64.22

Gene sequence:

>1143_bases
ATGGAAAATAAAATCATCCTGTCGTGCGCACTCGCGCTTTGCACGCTGAATGCCCACGCACAGAGCAGCGTCACGCTCTA
TGGCGTGATCGACAACGGCCTGTTCTATTCGACCAACCAGGGCGGCAAGCATGCAGTGCAGTTCCTGTCGTCGCCGACCG
AAACGAGCGTCTGGGGCCTGCGCGGCTCGGAAGATCTCGGTGGCGGCAACAAGGTCATCTTCAAGCTCGGCTCCGCGTTC
TCGATGGCCAACGGCACGGCCTGGCCGAGCGGCCGCATCTTCGGCGACTATGCATGGATCGGCCTGAGCAGCACGAGCGC
GGGCACGCTCAAGCTCGGCCGCATGCTCGACAGCGTAGGCGACTACCTCGGCGACTTCGCCGCAACCGGCAGTTGGGGTG
GCGCGCTCTATGCGCATCCGTACGACAACGACAATCTGTGGGCGACCTACATGGTCAACAACGCCGTCAAGTATCAGAGC
ATCGAACTGGCGGGCGTCACGTTCGGCGGCATGTACGCGTTCAGCAACAAGGCGGGCGCCGCCTCGGGCAGCGGCTCCGG
CTTCGCCGACAACCGGCTGTGGGCGGCCGGCCTCGCCTACGAAATCGGCCGCCTGAAGCTTGCCGCCGTCTACGAGCAGC
TCGACCATCCCGGTGACGATGCACCGGGTTCGCTGGGCGCCGTGGACGTGCTCGATGCGAATTTCACCGCCGCGCGCCAG
CGCATCTTCGGGCTGGGCGCACACTACGCATTCGACCGGTTCGAGATCGGCTCGAACGTGACGCGCACGGTGCTGGAGAT
GCCAACGGGAGAATGGCAGAACCCGGCCTTCACCGGCGCGAGCGGGCTGAGCTTCAACAACTACGAACTGAATGCGACGT
TCCATGCAACGGCCGCGGTCGACGTGAAAGGCGCGTACACCTATACGACGGCCAGCGTGGACGGCAAGCATCCGCACTGG
AACCAGTTCGGCCTGCTCGCCGAGTACGCACTGTCCAAGCGCACGCAGGTGTACCTGGACGCCGTCTACCAGCGCGTACA
CGGCGACGACACGCCGTTTTCGCAAGCCCAGATCAATACGCTCTCACCTGCGTCCGGCAACACGCAGGCGTTGGTCGGCC
TGGGCATCCGGCATCGATTCTGA

Upstream 100 bases:

>100_bases
CGCGCTTCGCGGCACGCACAGATCGACCGCGCATGACGCGATAGAAGCGGCTTCGATCGCATTCCACTCCCCACGCAATA
TAATCAGGATTCCGATTCAT

Downstream 100 bases:

>100_bases
GCGCCGGCATCGCGACACGCGCGCGTCCGAACGATGGCGACGCGCGCGTGTCGCGATGCGTGCCGCGGTCATGCCGTCCG
CTGACCCGGCGTGACCGCGG

Product: outer membrane protein, (porin)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MENKIILSCALALCTLNAHAQSSVTLYGVIDNGLFYSTNQGGKHAVQFLSSPTETSVWGLRGSEDLGGGNKVIFKLGSAF
SMANGTAWPSGRIFGDYAWIGLSSTSAGTLKLGRMLDSVGDYLGDFAATGSWGGALYAHPYDNDNLWATYMVNNAVKYQS
IELAGVTFGGMYAFSNKAGAASGSGSGFADNRLWAAGLAYEIGRLKLAAVYEQLDHPGDDAPGSLGAVDVLDANFTAARQ
RIFGLGAHYAFDRFEIGSNVTRTVLEMPTGEWQNPAFTGASGLSFNNYELNATFHATAAVDVKGAYTYTTASVDGKHPHW
NQFGLLAEYALSKRTQVYLDAVYQRVHGDDTPFSQAQINTLSPASGNTQALVGLGIRHRF

Sequences:

>Translated_380_residues
MENKIILSCALALCTLNAHAQSSVTLYGVIDNGLFYSTNQGGKHAVQFLSSPTETSVWGLRGSEDLGGGNKVIFKLGSAF
SMANGTAWPSGRIFGDYAWIGLSSTSAGTLKLGRMLDSVGDYLGDFAATGSWGGALYAHPYDNDNLWATYMVNNAVKYQS
IELAGVTFGGMYAFSNKAGAASGSGSGFADNRLWAAGLAYEIGRLKLAAVYEQLDHPGDDAPGSLGAVDVLDANFTAARQ
RIFGLGAHYAFDRFEIGSNVTRTVLEMPTGEWQNPAFTGASGLSFNNYELNATFHATAAVDVKGAYTYTTASVDGKHPHW
NQFGLLAEYALSKRTQVYLDAVYQRVHGDDTPFSQAQINTLSPASGNTQALVGLGIRHRF
>Mature_380_residues
MENKIILSCALALCTLNAHAQSSVTLYGVIDNGLFYSTNQGGKHAVQFLSSPTETSVWGLRGSEDLGGGNKVIFKLGSAF
SMANGTAWPSGRIFGDYAWIGLSSTSAGTLKLGRMLDSVGDYLGDFAATGSWGGALYAHPYDNDNLWATYMVNNAVKYQS
IELAGVTFGGMYAFSNKAGAASGSGSGFADNRLWAAGLAYEIGRLKLAAVYEQLDHPGDDAPGSLGAVDVLDANFTAARQ
RIFGLGAHYAFDRFEIGSNVTRTVLEMPTGEWQNPAFTGASGLSFNNYELNATFHATAAVDVKGAYTYTTASVDGKHPHW
NQFGLLAEYALSKRTQVYLDAVYQRVHGDDTPFSQAQINTLSPASGNTQALVGLGIRHRF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40491; Mature: 40491

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKIILSCALALCTLNAHAQSSVTLYGVIDNGLFYSTNQGGKHAVQFLSSPTETSVWGL
CCCCEEHHHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCHHHHHHHCCCCCCEEEEC
RGSEDLGGGNKVIFKLGSAFSMANGTAWPSGRIFGDYAWIGLSSTSAGTLKLGRMLDSVG
CCCCCCCCCCEEEEEECCCEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHH
DYLGDFAATGSWGGALYAHPYDNDNLWATYMVNNAVKYQSIELAGVTFGGMYAFSNKAGA
HHHHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCEEEEEEEEEEEEECCEEEECCCCCC
ASGSGSGFADNRLWAAGLAYEIGRLKLAAVYEQLDHPGDDAPGSLGAVDVLDANFTAARQ
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
RIFGLGAHYAFDRFEIGSNVTRTVLEMPTGEWQNPAFTGASGLSFNNYELNATFHATAAV
HHHHCCCHHEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCEEEEEEEEEEEEE
DVKGAYTYTTASVDGKHPHWNQFGLLAEYALSKRTQVYLDAVYQRVHGDDTPFSQAQINT
EECCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
LSPASGNTQALVGLGIRHRF
CCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MENKIILSCALALCTLNAHAQSSVTLYGVIDNGLFYSTNQGGKHAVQFLSSPTETSVWGL
CCCCEEHHHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCHHHHHHHCCCCCCEEEEC
RGSEDLGGGNKVIFKLGSAFSMANGTAWPSGRIFGDYAWIGLSSTSAGTLKLGRMLDSVG
CCCCCCCCCCEEEEEECCCEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHH
DYLGDFAATGSWGGALYAHPYDNDNLWATYMVNNAVKYQSIELAGVTFGGMYAFSNKAGA
HHHHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCEEEEEEEEEEEEECCEEEECCCCCC
ASGSGSGFADNRLWAAGLAYEIGRLKLAAVYEQLDHPGDDAPGSLGAVDVLDANFTAARQ
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
RIFGLGAHYAFDRFEIGSNVTRTVLEMPTGEWQNPAFTGASGLSFNNYELNATFHATAAV
HHHHCCCHHEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCEEEEEEEEEEEEE
DVKGAYTYTTASVDGKHPHWNQFGLLAEYALSKRTQVYLDAVYQRVHGDDTPFSQAQINT
EECCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
LSPASGNTQALVGLGIRHRF
CCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]