Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 78065624

GI number: 78065624

Start: 1085630

End: 1086298

Strand: Reverse

Name: ompA [H]

Synonym: Bcep18194_A4152

Alternate gene names: 78065624

Gene position: 1086298-1085630 (Counterclockwise)

Preceding gene: 78065641

Following gene: 78065623

Centisome position: 29.41

GC content: 60.39

Gene sequence:

>669_bases
ATGAATAAACTTTCAAAGCTCGCGTTCATTGCAGCTACCGCAGTTATGGCTGCATCCGCTTCGGCACAGTCGGTGCCGGC
GTCGCGTCAAGCCGTCAATGACAACTGGGTGAACGGCACGGGCGAATGGGTGTGGATGAACGGCACGAACGAGCTCTGCT
GGCGCGATGCGTTCTGGACGCCGGCCACCGCCAACGCGAAGTGCGATGGCGCACTGGTCGCCCAGGCACCGCAGCCGCCG
GTCGCTCCGGTCGCTCCGGCAATCACGAGCCAGAAGATCACGTATCAAGCTGACGCACTGTTCGACTTCGACAAGGCAAC
GCTCAAGCCGCTGGGCAAGCAAAAGCTGGACGAACTGGCTTCGAAGATCGAAGGCATGAACACGGAAGTGGTCGTCGCAA
CGGGCTACACGGACCGCATCGGTTCGGACAAGTACAACGACCGTCTGTCGCTGCGCCGTGCGCAAGCCGTGAAGTCGTAC
CTGGTCAGCAAGGGTGTGCCGGCCAACAAGATCTACACGGAAGGCAAGGGCAAGCGCAACCCGGTTACGACTGGCTGCAA
CCAGAAGAACCGCAAGCAACTCATCGCCTGCCTCGCACCGGATCGCCGCGTGGAAGTCGAAGTGGTTGGTACGCAAGAAG
TCCAGAAGACGACCGTTCCGGCAAACTAA

Upstream 100 bases:

>100_bases
TTTGTGCCGCACCAATGTTATACTTCGAGCAATGTATGACTTGTCACCGTCAACAGGCTCGCAGTAAACCTGCGGTAATC
TCAATTTCGAGAGGAGAAAT

Downstream 100 bases:

>100_bases
GCCGCGGTTTTCGACTGCTTCAAAGCCCCGCTCCGGCGGGGCTTTTTTCTTTGACGCCGCCTTTGACGCCCGTCCAGGCG
CTCGCCGCTTCGCCGCTCGT

Product: OmpA/MotB family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPQPP
VAPVAPAITSQKITYQADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSY
LVSKGVPANKIYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAN

Sequences:

>Translated_222_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPQPP
VAPVAPAITSQKITYQADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSY
LVSKGVPANKIYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAN
>Mature_222_residues
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPQPP
VAPVAPAITSQKITYQADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSY
LVSKGVPANKIYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAN

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=131, Percent_Identity=53.4351145038168, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI48994946, Length=108, Percent_Identity=36.1111111111111, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23968; Mature: 23968

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPQPPVAPVAPAITSQKITYQADALFDFDKATLKPLGKQKLDELA
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCEEECCHHHHCCCCHHHHHHHH
SKIEGMNTEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKIYTEGKGKRN
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
PVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAN
CCCCCCCCCCHHHEEEEECCCCEEEEEEECCCHHHCCCCCCC
>Mature Secondary Structure
MNKLSKLAFIAATAVMAASASAQSVPASRQAVNDNWVNGTGEWVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPQPPVAPVAPAITSQKITYQADALFDFDKATLKPLGKQKLDELA
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCEEECCHHHHCCCCHHHHHHHH
SKIEGMNTEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKIYTEGKGKRN
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
PVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQEVQKTTVPAN
CCCCCCCCCCHHHEEEEECCCCEEEEEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]