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The map label for this gene is yncD [C]

Identifier: 78065590

GI number: 78065590

Start: 1046044

End: 1048410

Strand: Direct

Name: yncD [C]

Synonym: Bcep18194_A4118

Alternate gene names: 78065590

Gene position: 1046044-1048410 (Clockwise)

Preceding gene: 78065589

Following gene: 78065591

Centisome position: 28.32

GC content: 67.72

Gene sequence:

>2367_bases
ATGTCCTCTCCCTTCGCCGCGCGGCCGTCGCGCGGCCGGCTGGCGCTCGCATGCGCGGCCGCCTTTGCGTGGCCTGCCGC
CCATGCGGCCTCGACGGACGATGCACGCGGCGCCACCGCGCGCGGTGGCGTCGAGCGTGCCGCCGATGCCGCCGCTCCCG
CTTCGGCCGTCGCAACCGTGCCGCCAGCGCCGGTAGCCGGCGATACGCTGACCGCCGTCAGTGTGACCGCGCAGCGGCAA
CCGGTCGATCCCGATACGCCGGCCGTCGTCACGTCGATCACGCGCGAGCAGATCGAATCGCACACCAACGTCACCACCGA
GGACGCGCTGAAGTACGCGCCTAACCTGATGGTCCGCAAGCGCTATATCGGCGACCGCAACAGCGTGTTCGCAGGCCGCG
ACTTCAACGAACTGCAGAGTGCGCGCGGACTCGTCTATGCCGACGGCGTGCTGCTGTCGAACCTGCTCGGCTCGAGCTAC
GCGTACCCGCCGCGCTGGTCGCTGATTCCGCCCGACGATATCGCGCGCGTCGACGTGCTCTATGGCCCCTTTTCCGCGCT
GTATCCGGGCAACTCGATCGGCTCGACCGTGCTGCTCACCACGCGTCGCCCGGAAAAGCTCGAGGCGTCGCTGTCGACGC
AGTTCTTCACGCAGCGCTACCACGACGGCTACGGATTCGCGGACAGCTTCGGCGGCAATCACCAGACCGCGCGGATTGCG
AACCGCGTCGGCCGGTTCTGGTTCGCGCTGTCGCTCGACCGGCTCGAGAACAACGGTCAGCCGATGCAGTATGCGAGCCC
CAATTCGGCGTACAACCCGAAGCTCGGCACGGCCGTGCCCGTGACGGGCGCCGCGACCGACATCGGGCCCAATGGCCGGC
CGCGGACGATCGTCGGCGCGCAGACGATCGAGCGGACCGAGCAGCTCAACGAGACGGTGCGGATGGGCTATGCGTTCACC
GACCACGTCGATGCGACGCTCACGCTCGGGCATTGGGAGAACCATTACCGGCAGCACGGCGAGACCTTCCTGCGCGATGC
GGCCGGCAATCCGGTCTACGGCGGCAACGTGTCGATCGGCGGCCAGAACATGACCGTCGCGCCGAACGCATTCGCGCCGC
AGCGCGGCGACCAGGAGAACTGGCTGTACGCGCTCGGCCTGAACGGCCGGCTCGATTCCGGCTGGCGCCTGTCGGGCGTC
GTGTCCGCGTACGACGTGTCGCGCGACGTGCAGCGCTCGGCGTCGACCGTGCAGGGAGGTGCAGGCACGCTGTTCCAGGG
CGACGGCACCGGCTGGCGCACGCTCGACCTGAAGGCCGAGGCGCCGGAAGTGAAGGGCCATACGTTCACGTTCGGCTATC
ACTACGACAACTACTTCCTGCGCAACGTCACGTTCAACACGGCCGACTGGCTGGCCGGGCCGACCACGTCGCTGTCGAGC
GTCTATCGCGGCGACACGCGCACGCAGGCGCTGTTCGGACAGGACGCGTGGCGCTTCGCGCCGGGCTGGCTCGCAACGCT
GGGGCTGCGCTACGAGCGCTGGGATGCATACGGCGGCGCGCTCGGCAATGCGAGCGGCACGCTCGGCTACGCGGACCGCA
GCGCGAATGCGCTGTCGCCGAAGGTCGCACTGCAATGGGATGCGACCGACGTCTGGCGCTTCCGGCTGTCGTTTGCGACC
GGCACGCGTTTCCCGACGGTCGGCGAACTGTTCCAGGGCACGATCTCGAACAACGCGATCGTCAACAACAACCCGAACCT
GCGGCCGGAAAAGGCGATCGACTGGGACTTCACGGCCGAACGCGACGTGGGCGTCGGCGTCGTGCGTGCCAGCGTGTTCC
AGAGCGATCTGCGCGATTCGATCTACAGCCAGACGACGGTGTCGGGCGCGACGACGGTGACCAACATCTCGAACGTCGAT
CGCGTGCGCGTGCGCGGCGTCGAACTCGCGTTCAGCGGCGAGAACGTCGGTTTGAAGGGGCTCGCGATCGACGCGAACGT
GTCGGCGAGCAACGCGCAGATCCTCGCCGATGCGGCGAATCCCGCGTATGTCGGCTCGCGCTTTCCGCGAATTCCGCGCA
TGCGTGCGAACCTGCTCGCGTCGTATCGCTTCGACGAGCACTGGCTGGCGAGCGTCGGCGTGCGCTACTCGGGCCGCCAG
TTCAACACGCTCGACAACAGCGACGTGAATCCGGACGTCTACGGCGGCACGAGCTCGTTCACGGTCGTCGACCTGAAGGC
GCGCTACCGCTTCGACCATCACTGGACCGCGTCGCTCGGTATCGACAACCTGACGGACCGCCGCTACTACGTGTTCCACC
CGTATCCGGGCCGTACTTTCTATGGAGAACTGAAATGGTCGCTGTGA

Upstream 100 bases:

>100_bases
CGCGCGTGCCGTCCGCGGCCGGGCCGCGTGCCGCGCCGTCCGTGCGCGGCGCGTGCGCTCGTGTCCGGCGGCGTCCGATC
ACGTTTTCAGGAATTCACTC

Downstream 100 bases:

>100_bases
GATCGCTCGCGGCAGGCGTCGCGCTGTGGTTCGCGTCGCTGTCGCCGGCCGGCGCGCACGATGCGCACGACGTGCCGAAG
GCCGCCGATTCGCACGCCGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB-Dependent Siderophore Receptor; Outer Membrane Receptor; NB Dependent Receptor; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Vitamin; Exogenous Ferric Siderophore Receptor; NB-Dependent Outer Membrane Heme Receptor; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein; Ferrisiderophore Receptor Protein

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MSSPFAARPSRGRLALACAAAFAWPAAHAASTDDARGATARGGVERAADAAAPASAVATVPPAPVAGDTLTAVSVTAQRQ
PVDPDTPAVVTSITREQIESHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGVLLSNLLGSSY
AYPPRWSLIPPDDIARVDVLYGPFSALYPGNSIGSTVLLTTRRPEKLEASLSTQFFTQRYHDGYGFADSFGGNHQTARIA
NRVGRFWFALSLDRLENNGQPMQYASPNSAYNPKLGTAVPVTGAATDIGPNGRPRTIVGAQTIERTEQLNETVRMGYAFT
DHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGV
VSAYDVSRDVQRSASTVQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTFNTADWLAGPTTSLSS
VYRGDTRTQALFGQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTLGYADRSANALSPKVALQWDATDVWRFRLSFAT
GTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVD
RVRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
FNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDHHWTASLGIDNLTDRRYYVFHPYPGRTFYGELKWSL

Sequences:

>Translated_788_residues
MSSPFAARPSRGRLALACAAAFAWPAAHAASTDDARGATARGGVERAADAAAPASAVATVPPAPVAGDTLTAVSVTAQRQ
PVDPDTPAVVTSITREQIESHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGVLLSNLLGSSY
AYPPRWSLIPPDDIARVDVLYGPFSALYPGNSIGSTVLLTTRRPEKLEASLSTQFFTQRYHDGYGFADSFGGNHQTARIA
NRVGRFWFALSLDRLENNGQPMQYASPNSAYNPKLGTAVPVTGAATDIGPNGRPRTIVGAQTIERTEQLNETVRMGYAFT
DHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGV
VSAYDVSRDVQRSASTVQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTFNTADWLAGPTTSLSS
VYRGDTRTQALFGQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTLGYADRSANALSPKVALQWDATDVWRFRLSFAT
GTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVD
RVRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
FNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDHHWTASLGIDNLTDRRYYVFHPYPGRTFYGELKWSL
>Mature_787_residues
SSPFAARPSRGRLALACAAAFAWPAAHAASTDDARGATARGGVERAADAAAPASAVATVPPAPVAGDTLTAVSVTAQRQP
VDPDTPAVVTSITREQIESHTNVTTEDALKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGVLLSNLLGSSYA
YPPRWSLIPPDDIARVDVLYGPFSALYPGNSIGSTVLLTTRRPEKLEASLSTQFFTQRYHDGYGFADSFGGNHQTARIAN
RVGRFWFALSLDRLENNGQPMQYASPNSAYNPKLGTAVPVTGAATDIGPNGRPRTIVGAQTIERTEQLNETVRMGYAFTD
HVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGVV
SAYDVSRDVQRSASTVQGGAGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTFNTADWLAGPTTSLSSV
YRGDTRTQALFGQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTLGYADRSANALSPKVALQWDATDVWRFRLSFATG
TRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVDR
VRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQF
NTLDNSDVNPDVYGGTSSFTVVDLKARYRFDHHWTASLGIDNLTDRRYYVFHPYPGRTFYGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787723, Length=359, Percent_Identity=24.7910863509749, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85774; Mature: 85643

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPFAARPSRGRLALACAAAFAWPAAHAASTDDARGATARGGVERAADAAAPASAVATV
CCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
PPAPVAGDTLTAVSVTAQRQPVDPDTPAVVTSITREQIESHTNVTTEDALKYAPNLMVRK
CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEH
RYIGDRNSVFAGRDFNELQSARGLVYADGVLLSNLLGSSYAYPPRWSLIPPDDIARVDVL
HHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
YGPFSALYPGNSIGSTVLLTTRRPEKLEASLSTQFFTQRYHDGYGFADSFGGNHQTARIA
ECCHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
NRVGRFWFALSLDRLENNGQPMQYASPNSAYNPKLGTAVPVTGAATDIGPNGRPRTIVGA
HHHHHEEEEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECH
QTIERTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIG
HHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVQRSASTVQGG
CCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCC
AGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTFNTADWLAGPTTSLSS
CCEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHCCCCCHHHHH
VYRGDTRTQALFGQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTLGYADRSANALSP
HHCCCCHHHHHHCCCCCEECCCHHHHHCCEEEEHHCCCCCCCCCCCCEEECCCCCCCCCC
KVALQWDATDVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAE
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
RDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVDRVRVRGVELAFSGENVGLKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEE
LAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
EEEECCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCE
FNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDHHWTASLGIDNLTDRRYYVFHPYPGRTF
ECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCEE
YGELKWSL
EEEEEECC
>Mature Secondary Structure 
SSPFAARPSRGRLALACAAAFAWPAAHAASTDDARGATARGGVERAADAAAPASAVATV
CCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
PPAPVAGDTLTAVSVTAQRQPVDPDTPAVVTSITREQIESHTNVTTEDALKYAPNLMVRK
CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEH
RYIGDRNSVFAGRDFNELQSARGLVYADGVLLSNLLGSSYAYPPRWSLIPPDDIARVDVL
HHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
YGPFSALYPGNSIGSTVLLTTRRPEKLEASLSTQFFTQRYHDGYGFADSFGGNHQTARIA
ECCHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
NRVGRFWFALSLDRLENNGQPMQYASPNSAYNPKLGTAVPVTGAATDIGPNGRPRTIVGA
HHHHHEEEEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECH
QTIERTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIG
HHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVQRSASTVQGG
CCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCC
AGTLFQGDGTGWRTLDLKAEAPEVKGHTFTFGYHYDNYFLRNVTFNTADWLAGPTTSLSS
CCEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHCCCCCHHHHH
VYRGDTRTQALFGQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTLGYADRSANALSP
HHCCCCHHHHHHCCCCCEECCCHHHHHCCEEEEHHCCCCCCCCCCCCEEECCCCCCCCCC
KVALQWDATDVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAE
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
RDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVDRVRVRGVELAFSGENVGLKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEE
LAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
EEEECCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCE
FNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDHHWTASLGIDNLTDRRYYVFHPYPGRTF
ECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCEE
YGELKWSL
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA