| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78065571
Identifier: 78065571
GI number: 78065571
Start: 1026768
End: 1029440
Strand: Direct
Name: 78065571
Synonym: Bcep18194_A4099
Alternate gene names: NA
Gene position: 1026768-1029440 (Clockwise)
Preceding gene: 78065564
Following gene: 78065572
Centisome position: 27.79
GC content: 65.1
Gene sequence:
>2673_bases ATGAGTGCGCAGGATATCGTGCGGGCGCTTCAAGGGGGGCTGATCCAGCAGGACCGCTTGCTGAAACTCGACACTCCGCT TGGGCCCGACGTGTTGTTGCCGCAGCGTGCGGCGGGACTTTCGCGGATCGGCCGGCATTACGACTTCACGCTCGATGTGC TGTCGACGCGCAGCGACGTCAAGCTGAAGAGCCTGATCGGGCAGCCCGTTACCCTGTGGATCCAGCAGCCGAACCAGTCG TATCTGCCCCGTCACGGCTATGTCCATATGGTGCGACGGCTCGGATCGGAAGGCGGTCTGACCAGCTACCAGCTCGGTTT CGCGTCATGGATGCATTTCCTCAAGTTCCGCCGCGATCAGCGCATCTGGCAGGACAAGCCGGTCGACGAAATCCTGCGGG ACGTGTTCAACGCGCACCCGCAGGCGAAAGGCCGATTCGAGTTCGCGCTGTCGAAGCCGCTGTCGCCTCGATCGTATTGC ACCCAGTACGAGGACGATTGGACCTTCGCGCACCGGCTGATGGAGGAAGAAGGCCTGTTCGGCATCTGGAAGCAGGCCGA TGACGGTCAGTCCCACACCCTGACCGTGACGGATGGCGTGGATACCTGCGCGCCGCTTGCCGCGAGGACCATGCGATTTT CCCGTTATGGCGCGAACCGCGAGGTCGACGCGCTGGTTCGATGGTCCGACTTGCGCACGCTGCACAGTGCCGCGCTCACT ACCCGTACGTTCGACTACAAGAGTCCGTCACCCCTGGCGAATCCGAAGGGGACGCACATGCCGACGGTATCGCACGAACT GCCCGAGCAGCTCGAGATGTATGAATATACGGGCCCGTACACTTATCTGAAGCAGGAGCGCGGCGATCACCTGACCAAGG TGCGGATGGAAGAGTGGGAGTCGCGTGCCAAGCGGTTCTACGGCGCGGGCGGCTTGCGCGGCGTCGATGCGGGTGTGTGG TTCGAACTCGCGGGGCACCCCGAGCACGACCGGGAATCCGGCGACCGGCGACAGTTCGTCGTCGTCGAGACTGTCTGGCT GATCCAGAACAACCTGCCGGGCTCGAGCCATCACGCGAACTTCGCACACAGCCTGCGGCACCGGATCGACGAAGCGGTCG CGCAGCAGGGCGGAGAGCCAACCGGGTTGAGCGTGTCGCATCACGACGGTTCCGAGGGCTTCTTCCTGACGGAAATCGAG GCGCAGCGCAAATCCGTTCCGTATCGCAGTCCGTTCGAACACCACAAACCGGTCATGCAGATGCAGACGGCCACCGTGGT AGGCCAGCAGGGCAACGCGATCCATACGGACGAGATGGGGCGCGTCAAGGTGCAGTTCCACTGGGACCGCGTCGGCCAGC GCGACGAGCGCAGCTCGTGCTGGATGCGTGTCAGCCAGCCGTGGGGCGGGCAGGGGTTCGGGATGATCCATGTGCCTCGG ATCGGGGACGAAGTCATCGTTTCGTTCCTGGACGGATGCCCGGACCGGCCCGTCATCACGGGCCGCGTGACCAACGGCAT CAACGTCGTACAGTGGAAGCTGCCGGACAACCAGGCACTGTCGGGCCTGCGCTCGCGCGATATCGGCGGTGCACAGGCGA ACCAGGTCGTGGCCGACGATACGCCCGGCCGGTTGCAGGTGCAGGTGTCGAGCGACCACGAGCAGTCGCGCCTCGTGGTC GGCTACAACACGCGTATCGACGGCCATGCGGGGCGCGCGAGCGGGCGCGGGACCGGATGGGAGCTGGCCACCGACGCGTG GGGCGTGCTGCGTGCGAATCGCGGCATGCTGGTGACGACCGAAGCGCGTACCGGCGCGAGCGCGCCGGTGAAAGATCTCG GCGAGACGGTGCAGCGTCTGGCGCAGGCGCGCGAGTTGCATGACACGCTTGCCAAGGCCGCGATCCAGGCCCAGGCGCAG GACGGACAGGATCAGCCCGCGGTGGTCGAGGCGCTTCGGAAGCAAGGTGACGAGATCGGCGGGCAGGGCGGTGGAGATTA CCCGGAGCTGTCGAAGCCGCATCTGGTCGTCGCGTCGCCGGCCGGAATCGAAGCGACCACGGCGGGCAGTACGCACATTG CGAGCGCGGAGCATACGGCGCTCACCGGCGGCGGCCATGTCAGCGTGAGCAGCGGCAGCAGTCTGCTGGCCACCGCCCGC AACGCGATTCGTTTCTTCGCCTACAAGCTGGGCATCCGGATGATCTCCTATGCCGGCGACATCGACATCAAGGCGCTGCA GAAGAACCTGAATCTGCTGGCGAAGCTGGAGATCACACAGAGCGCGAACCGGATCACGATCCGCGCGACCGAGGAGGTGA TGCTTCACGGCGGCGACAGCTATATCAGCCTGAAGAGCGGCAAGATCACGGTCGGCGGCGAGTTGTACGAGGTCAACGCC CAGGCGCAAAACATGCCGCCGAAACCTATGGGCGTGAGCCCGAACGGGTTGCCCGACGTTCAGGCGAACGACCAGCGGTT CAGGGTGCTGTCTCCGACGGGCAAGCCGCTTCCCGGGGTGGACTATCGGCTCACGACGCCGTCCGGCGGCCATATCTTCG CGACGGACGGTCTGGGGCGCTCGCCGATGGTGAATACGGCAGAACAGGAAAATGCGGAGTTCCAGTTGCACTGGGACGAC TTTGCAGCGGCGTCCGACCGCGCAGGTGCGTAA
Upstream 100 bases:
>100_bases ACGAGAGTGGTCGACGATTTGACTGTAGAATCGCGGCCTGAGAGCGCCAGCCACCATCTGGTGAAAAAACGACGGCAAAA GAAGCAATAAAGGGATTGGA
Downstream 100 bases:
>100_bases CGGAACACGGGAACTCGACTAGGAGCGGAAGGCTTTGGCAGACAATCTGAAGGCAACGGCGCAGACCAACCCGGAATCGA AGGTCTGCGTGGACGCGCAG
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Like Protein; VgrG Protein; VGR-Related Type VI Secretion System Protein; Rhs Element Vgr Related Protein; VgrG Family T6SS G; Vgr Related Protein; Replication/Virulence Associated Protein; Rhs Family Protein; Conserved Hypothethical Protein; Rhs Element Vgr ProteinGp5-Like; Rhs Element Vgr-Related Protein; Type VI Secretion System VgrG Family Protein
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MSAQDIVRALQGGLIQQDRLLKLDTPLGPDVLLPQRAAGLSRIGRHYDFTLDVLSTRSDVKLKSLIGQPVTLWIQQPNQS YLPRHGYVHMVRRLGSEGGLTSYQLGFASWMHFLKFRRDQRIWQDKPVDEILRDVFNAHPQAKGRFEFALSKPLSPRSYC TQYEDDWTFAHRLMEEEGLFGIWKQADDGQSHTLTVTDGVDTCAPLAARTMRFSRYGANREVDALVRWSDLRTLHSAALT TRTFDYKSPSPLANPKGTHMPTVSHELPEQLEMYEYTGPYTYLKQERGDHLTKVRMEEWESRAKRFYGAGGLRGVDAGVW FELAGHPEHDRESGDRRQFVVVETVWLIQNNLPGSSHHANFAHSLRHRIDEAVAQQGGEPTGLSVSHHDGSEGFFLTEIE AQRKSVPYRSPFEHHKPVMQMQTATVVGQQGNAIHTDEMGRVKVQFHWDRVGQRDERSSCWMRVSQPWGGQGFGMIHVPR IGDEVIVSFLDGCPDRPVITGRVTNGINVVQWKLPDNQALSGLRSRDIGGAQANQVVADDTPGRLQVQVSSDHEQSRLVV GYNTRIDGHAGRASGRGTGWELATDAWGVLRANRGMLVTTEARTGASAPVKDLGETVQRLAQARELHDTLAKAAIQAQAQ DGQDQPAVVEALRKQGDEIGGQGGGDYPELSKPHLVVASPAGIEATTAGSTHIASAEHTALTGGGHVSVSSGSSLLATAR NAIRFFAYKLGIRMISYAGDIDIKALQKNLNLLAKLEITQSANRITIRATEEVMLHGGDSYISLKSGKITVGGELYEVNA QAQNMPPKPMGVSPNGLPDVQANDQRFRVLSPTGKPLPGVDYRLTTPSGGHIFATDGLGRSPMVNTAEQENAEFQLHWDD FAAASDRAGA
Sequences:
>Translated_890_residues MSAQDIVRALQGGLIQQDRLLKLDTPLGPDVLLPQRAAGLSRIGRHYDFTLDVLSTRSDVKLKSLIGQPVTLWIQQPNQS YLPRHGYVHMVRRLGSEGGLTSYQLGFASWMHFLKFRRDQRIWQDKPVDEILRDVFNAHPQAKGRFEFALSKPLSPRSYC TQYEDDWTFAHRLMEEEGLFGIWKQADDGQSHTLTVTDGVDTCAPLAARTMRFSRYGANREVDALVRWSDLRTLHSAALT TRTFDYKSPSPLANPKGTHMPTVSHELPEQLEMYEYTGPYTYLKQERGDHLTKVRMEEWESRAKRFYGAGGLRGVDAGVW FELAGHPEHDRESGDRRQFVVVETVWLIQNNLPGSSHHANFAHSLRHRIDEAVAQQGGEPTGLSVSHHDGSEGFFLTEIE AQRKSVPYRSPFEHHKPVMQMQTATVVGQQGNAIHTDEMGRVKVQFHWDRVGQRDERSSCWMRVSQPWGGQGFGMIHVPR IGDEVIVSFLDGCPDRPVITGRVTNGINVVQWKLPDNQALSGLRSRDIGGAQANQVVADDTPGRLQVQVSSDHEQSRLVV GYNTRIDGHAGRASGRGTGWELATDAWGVLRANRGMLVTTEARTGASAPVKDLGETVQRLAQARELHDTLAKAAIQAQAQ DGQDQPAVVEALRKQGDEIGGQGGGDYPELSKPHLVVASPAGIEATTAGSTHIASAEHTALTGGGHVSVSSGSSLLATAR NAIRFFAYKLGIRMISYAGDIDIKALQKNLNLLAKLEITQSANRITIRATEEVMLHGGDSYISLKSGKITVGGELYEVNA QAQNMPPKPMGVSPNGLPDVQANDQRFRVLSPTGKPLPGVDYRLTTPSGGHIFATDGLGRSPMVNTAEQENAEFQLHWDD FAAASDRAGA >Mature_889_residues SAQDIVRALQGGLIQQDRLLKLDTPLGPDVLLPQRAAGLSRIGRHYDFTLDVLSTRSDVKLKSLIGQPVTLWIQQPNQSY LPRHGYVHMVRRLGSEGGLTSYQLGFASWMHFLKFRRDQRIWQDKPVDEILRDVFNAHPQAKGRFEFALSKPLSPRSYCT QYEDDWTFAHRLMEEEGLFGIWKQADDGQSHTLTVTDGVDTCAPLAARTMRFSRYGANREVDALVRWSDLRTLHSAALTT RTFDYKSPSPLANPKGTHMPTVSHELPEQLEMYEYTGPYTYLKQERGDHLTKVRMEEWESRAKRFYGAGGLRGVDAGVWF ELAGHPEHDRESGDRRQFVVVETVWLIQNNLPGSSHHANFAHSLRHRIDEAVAQQGGEPTGLSVSHHDGSEGFFLTEIEA QRKSVPYRSPFEHHKPVMQMQTATVVGQQGNAIHTDEMGRVKVQFHWDRVGQRDERSSCWMRVSQPWGGQGFGMIHVPRI GDEVIVSFLDGCPDRPVITGRVTNGINVVQWKLPDNQALSGLRSRDIGGAQANQVVADDTPGRLQVQVSSDHEQSRLVVG YNTRIDGHAGRASGRGTGWELATDAWGVLRANRGMLVTTEARTGASAPVKDLGETVQRLAQARELHDTLAKAAIQAQAQD GQDQPAVVEALRKQGDEIGGQGGGDYPELSKPHLVVASPAGIEATTAGSTHIASAEHTALTGGGHVSVSSGSSLLATARN AIRFFAYKLGIRMISYAGDIDIKALQKNLNLLAKLEITQSANRITIRATEEVMLHGGDSYISLKSGKITVGGELYEVNAQ AQNMPPKPMGVSPNGLPDVQANDQRFRVLSPTGKPLPGVDYRLTTPSGGHIFATDGLGRSPMVNTAEQENAEFQLHWDDF AAASDRAGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98033; Mature: 97902
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQDIVRALQGGLIQQDRLLKLDTPLGPDVLLPQRAAGLSRIGRHYDFTLDVLSTRSDV CCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC KLKSLIGQPVTLWIQQPNQSYLPRHGYVHMVRRLGSEGGLTSYQLGFASWMHFLKFRRDQ HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHH RIWQDKPVDEILRDVFNAHPQAKGRFEFALSKPLSPRSYCTQYEDDWTFAHRLMEEEGLF HHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCE GIWKQADDGQSHTLTVTDGVDTCAPLAARTMRFSRYGANREVDALVRWSDLRTLHSAALT EEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHH TRTFDYKSPSPLANPKGTHMPTVSHELPEQLEMYEYTGPYTYLKQERGDHLTKVRMEEWE EEEECCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHH SRAKRFYGAGGLRGVDAGVWFELAGHPEHDRESGDRRQFVVVETVWLIQNNLPGSSHHAN HHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCHH FAHSLRHRIDEAVAQQGGEPTGLSVSHHDGSEGFFLTEIEAQRKSVPYRSPFEHHKPVMQ HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEHHHHHCCCCCCCHHHCCCHHH MQTATVVGQQGNAIHTDEMGRVKVQFHWDRVGQRDERSSCWMRVSQPWGGQGFGMIHVPR HHHHHEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCC IGDEVIVSFLDGCPDRPVITGRVTNGINVVQWKLPDNQALSGLRSRDIGGAQANQVVADD CCHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEECC TPGRLQVQVSSDHEQSRLVVGYNTRIDGHAGRASGRGTGWELATDAWGVLRANRGMLVTT CCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCCCCCCEECCCCHHHEECCCCEEEEE EARTGASAPVKDLGETVQRLAQARELHDTLAKAAIQAQAQDGQDQPAVVEALRKQGDEIG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHCC GQGGGDYPELSKPHLVVASPAGIEATTAGSTHIASAEHTALTGGGHVSVSSGSSLLATAR CCCCCCCCCCCCCEEEEECCCCCEEECCCCCEECCCCCEEECCCCEEEECCCCHHHHHHH NAIRFFAYKLGIRMISYAGDIDIKALQKNLNLLAKLEITQSANRITIRATEEVMLHGGDS HHHHHHHHHHHHHHEEECCCCHHHHHHHCCCEEEEEEEECCCCEEEEEEEEEEEEECCCC YISLKSGKITVGGELYEVNAQAQNMPPKPMGVSPNGLPDVQANDQRFRVLSPTGKPLPGV EEEEECCEEEECCEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC DYRLTTPSGGHIFATDGLGRSPMVNTAEQENAEFQLHWDDFAAASDRAGA CEEEECCCCCEEEEECCCCCCCCCCCHHCCCCEEEEEEHHHCCCCCCCCC >Mature Secondary Structure SAQDIVRALQGGLIQQDRLLKLDTPLGPDVLLPQRAAGLSRIGRHYDFTLDVLSTRSDV CHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC KLKSLIGQPVTLWIQQPNQSYLPRHGYVHMVRRLGSEGGLTSYQLGFASWMHFLKFRRDQ HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHH RIWQDKPVDEILRDVFNAHPQAKGRFEFALSKPLSPRSYCTQYEDDWTFAHRLMEEEGLF HHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCE GIWKQADDGQSHTLTVTDGVDTCAPLAARTMRFSRYGANREVDALVRWSDLRTLHSAALT EEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHH TRTFDYKSPSPLANPKGTHMPTVSHELPEQLEMYEYTGPYTYLKQERGDHLTKVRMEEWE EEEECCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHH SRAKRFYGAGGLRGVDAGVWFELAGHPEHDRESGDRRQFVVVETVWLIQNNLPGSSHHAN HHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCHH FAHSLRHRIDEAVAQQGGEPTGLSVSHHDGSEGFFLTEIEAQRKSVPYRSPFEHHKPVMQ HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEHHHHHCCCCCCCHHHCCCHHH MQTATVVGQQGNAIHTDEMGRVKVQFHWDRVGQRDERSSCWMRVSQPWGGQGFGMIHVPR HHHHHEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEECCC IGDEVIVSFLDGCPDRPVITGRVTNGINVVQWKLPDNQALSGLRSRDIGGAQANQVVADD CCHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEECC TPGRLQVQVSSDHEQSRLVVGYNTRIDGHAGRASGRGTGWELATDAWGVLRANRGMLVTT CCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCCCCCCEECCCCHHHEECCCCEEEEE EARTGASAPVKDLGETVQRLAQARELHDTLAKAAIQAQAQDGQDQPAVVEALRKQGDEIG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHCC GQGGGDYPELSKPHLVVASPAGIEATTAGSTHIASAEHTALTGGGHVSVSSGSSLLATAR CCCCCCCCCCCCCEEEEECCCCCEEECCCCCEECCCCCEEECCCCEEEECCCCHHHHHHH NAIRFFAYKLGIRMISYAGDIDIKALQKNLNLLAKLEITQSANRITIRATEEVMLHGGDS HHHHHHHHHHHHHHEEECCCCHHHHHHHCCCEEEEEEEECCCCEEEEEEEEEEEEECCCC YISLKSGKITVGGELYEVNAQAQNMPPKPMGVSPNGLPDVQANDQRFRVLSPTGKPLPGV EEEEECCEEEECCEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC DYRLTTPSGGHIFATDGLGRSPMVNTAEQENAEFQLHWDDFAAASDRAGA CEEEECCCCCEEEEECCCCCCCCCCCHHCCCCEEEEEEHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA