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The map label for this gene is rfaC [H]

Identifier: 78065564

GI number: 78065564

Start: 1021909

End: 1022931

Strand: Direct

Name: rfaC [H]

Synonym: Bcep18194_A4092

Alternate gene names: 78065564

Gene position: 1021909-1022931 (Clockwise)

Preceding gene: 78065562

Following gene: 78065571

Centisome position: 27.66

GC content: 69.79

Gene sequence:

>1023_bases
TTGGCCCGTCTATCCCCACACATCGTGAAACGTATCCTCATCGTGAAAGTGACGTCGCTCGGCGACGTCGTCCAGACGCT
ACCGGTCGTTGCGGATCTGCATCGCGCCTTTCCCGGCGTAACGGTCGACTGGGCGGTGGACGAATCGTGCGCGGAGGTCG
TGCGCTGGCATCCGGGCGTCAGCCATGTCCTTTGCGCGCCGCTGCGCCGCTTCAAGAAGATGCGCAATCGCGGCGACCTG
AAGGCGATCACGGCGTCGATCAGCGCGCTGCGGGCACACCGCTACGATGCGGTGATCGACCTGCACGGCGTCTACAAGAG
CGCGATCATTTCGGCGCTCGCACGCGCCGCGCGCCGCGTCGGCTACCAGACGCAGGATCTCGGCGAAACGGGTGCACGCT
TCGCGTATTCGCATCGCTTCGGCCCGCGGCCGGACTGCGACGCGTGGCACGGGATGCGCGTGAGCGCCGGCGAGGCGCTC
GGCTACGCGCCCGAGGGCATCGCCACGTACGGCATCGTCCCGCCGCGGGACGTGAACCTGCCGGCGGCCGTGACCGACGG
CGCACCGTTCATGCTGCTGTTCCATGCGACGTCGAACCCCGACAAGAAATGGCCGGCCGACCACTGGGCCGCGCTCGCCA
CGCAGATGATGGCGCGTGGCGTACGCGTGCTGTTGCCGTGGGGATCGGCCGCCGAGCACGACGATGCACAGGACATTGCC
GCACGCGCGCCGGGTTCGGTCGTGCTGCCCGCGATGACGGTGCGCGAGCTCGGCGCGGCGCTCGGCCGGGCTGCGCTCGT
GGTGGGGGTCGATACGGGGTTCGTGCACATGGCGCACGCGCTGAAGCGGCCGACCGTGATGATTTTCGTCGCGACGTCGC
GGCACCATTGCGGCATCGGCGGCGCGCCGAATGCACTGTCGATCGGCGAGCCGGGCACGATGCCGTCCGTCGACGAGGCG
CTGGATGCGATCGATGCGGTCGGGCCGGCCTACGGCGCGCTGCGCGCGCGGCTGACCGCCTGA

Upstream 100 bases:

>100_bases
GCGGGCGGGGCGCGAGAATGTTCCCGAAAGGAGATGCATTTTGTTGCAAAAGTAATTTTCACGTAATGTTGGCGCATGTA
ACCATCGTTAGCATGCCAAA

Downstream 100 bases:

>100_bases
CGAAGCGACGCGTGCCGGCTCAGGTGGCTCAGGCGAGCAGCGCCTCGACCGTGACGACGGCGGCGATGGCCGCCAGATTC
GCCAGCAGCGCTTCGAACAC

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MARLSPHIVKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSHVLCAPLRRFKKMRNRGDL
KAITASISALRAHRYDAVIDLHGVYKSAIISALARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEAL
GYAPEGIATYGIVPPRDVNLPAAVTDGAPFMLLFHATSNPDKKWPADHWAALATQMMARGVRVLLPWGSAAEHDDAQDIA
ARAPGSVVLPAMTVRELGAALGRAALVVGVDTGFVHMAHALKRPTVMIFVATSRHHCGIGGAPNALSIGEPGTMPSVDEA
LDAIDAVGPAYGALRARLTA

Sequences:

>Translated_340_residues
MARLSPHIVKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSHVLCAPLRRFKKMRNRGDL
KAITASISALRAHRYDAVIDLHGVYKSAIISALARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEAL
GYAPEGIATYGIVPPRDVNLPAAVTDGAPFMLLFHATSNPDKKWPADHWAALATQMMARGVRVLLPWGSAAEHDDAQDIA
ARAPGSVVLPAMTVRELGAALGRAALVVGVDTGFVHMAHALKRPTVMIFVATSRHHCGIGGAPNALSIGEPGTMPSVDEA
LDAIDAVGPAYGALRARLTA
>Mature_339_residues
ARLSPHIVKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSHVLCAPLRRFKKMRNRGDLK
AITASISALRAHRYDAVIDLHGVYKSAIISALARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALG
YAPEGIATYGIVPPRDVNLPAAVTDGAPFMLLFHATSNPDKKWPADHWAALATQMMARGVRVLLPWGSAAEHDDAQDIAA
RAPGSVVLPAMTVRELGAALGRAALVVGVDTGFVHMAHALKRPTVMIFVATSRHHCGIGGAPNALSIGEPGTMPSVDEAL
DAIDAVGPAYGALRARLTA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=282, Percent_Identity=35.1063829787234, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36231; Mature: 36100

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLSPHIVKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCH
SHVLCAPLRRFKKMRNRGDLKAITASISALRAHRYDAVIDLHGVYKSAIISALARAARRV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHC
GYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYAPEGIATYGIVPPRDVNL
CCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCC
PAAVTDGAPFMLLFHATSNPDKKWPADHWAALATQMMARGVRVLLPWGSAAEHDDAQDIA
CEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
ARAPGSVVLPAMTVRELGAALGRAALVVGVDTGFVHMAHALKRPTVMIFVATSRHHCGIG
HCCCCCEEEHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCC
GAPNALSIGEPGTMPSVDEALDAIDAVGPAYGALRARLTA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
ARLSPHIVKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCH
SHVLCAPLRRFKKMRNRGDLKAITASISALRAHRYDAVIDLHGVYKSAIISALARAARRV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHC
GYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYAPEGIATYGIVPPRDVNL
CCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCC
PAAVTDGAPFMLLFHATSNPDKKWPADHWAALATQMMARGVRVLLPWGSAAEHDDAQDIA
CEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
ARAPGSVVLPAMTVRELGAALGRAALVVGVDTGFVHMAHALKRPTVMIFVATSRHHCGIG
HCCCCCEEEHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCC
GAPNALSIGEPGTMPSVDEALDAIDAVGPAYGALRARLTA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]