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The map label for this gene is ydaL [C]

Identifier: 78065548

GI number: 78065548

Start: 1003257

End: 1004093

Strand: Reverse

Name: ydaL [C]

Synonym: Bcep18194_A4076

Alternate gene names: 78065548

Gene position: 1004093-1003257 (Counterclockwise)

Preceding gene: 78065549

Following gene: 78065547

Centisome position: 27.18

GC content: 71.45

Gene sequence:

>837_bases
GTGCAGCGGCTTTTTTTTGCCCGCGCGCCCGAACGCGCCTGCCCTGCGTACCGAATCATGGCGAAGAACCAGCCCCATCC
GAGCGATCCCGCGAAGCGGCAGATCGCCGCCCGTCCCGCAAACCCCGCGCCCGTCGCGCCGGCGCCCGCGCCCGATCCCG
CCGCGTTGCGCGGCCAGGGGCTCGCGGGCCTCGGCGCGCTGCGCAAGTCGCTGCAAGGCGAAGCCGATCGCCGCGACCGC
GAGCGCATCGAAACGGCCAAGGCCGAGCGCAAGGCGGAAGCCGACGCGAACGTGTTCCGCAACGAGGTCGGCACCATCCA
GCCGCTCAAGGCGCCACCGCGCGCAGCGGCCGGCCGCACGCCGCCCGACCCGGTGCCGAAGCAGACGCAGCGCGACGAGG
AAGCCGTGCTGAACGCGACGCTGTCCGACGAATTCGATCCTGAAACGCTGCTCGACAGCGACGACTCGCTGTACTACCAC
CGCCCCGGCGTCAGCCGCGACGTCGTGCGCAAGCTGCGCAGCGGCGCGTGGATCGTGCAGGCGCAGATCGACCTGCACGG
GATGCGGCGCGACGAAGCGCGCGACGCGCTCGCAGAATTCATCCGCGAAGCCGGCAAGAAAGGGCTGCGCTGCCTGCGCG
TGATCCACGGCAAGGGGCTCGGCTCGATCGGCAAGGAACCGGTGCTGAAAGGCAAGGTCCGCGCGTGGCTCGTGCAGAAG
GAAGAAGTTATCGCGTTCTGCGAGGCACGCGGCAACGACGGCGGCGCGGGCGCGGTTCTGGTGCTGCTGCAACCGTTCGC
GGCGCCCGGCGACCGGGGGCCGCGTGCCGCATCCTAG

Upstream 100 bases:

>100_bases
GCCTGCACGACAAGAAGTAAGCCGCGAGACCTGTCGCGCCGGGCGCTACAATGGCGTCCGCTGCCGCGATGCGGGTCTGG
CCGGACAAGCCGCTGCCGCC

Downstream 100 bases:

>100_bases
GCTGACGCTCGCGATCGCGATACTGGAGGCGATCGCCACGCTGGCCTTTGCGATCTCGGGCTTCATCGAGGCGCGCAAGA
ACCGCCTCGACTCGGTCGGC

Product: Smr protein/MutS2-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQRLFFARAPERACPAYRIMAKNQPHPSDPAKRQIAARPANPAPVAPAPAPDPAALRGQGLAGLGALRKSLQGEADRRDR
ERIETAKAERKAEADANVFRNEVGTIQPLKAPPRAAAGRTPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYH
RPGVSRDVVRKLRSGAWIVQAQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQK
EEVIAFCEARGNDGGAGAVLVLLQPFAAPGDRGPRAAS

Sequences:

>Translated_278_residues
MQRLFFARAPERACPAYRIMAKNQPHPSDPAKRQIAARPANPAPVAPAPAPDPAALRGQGLAGLGALRKSLQGEADRRDR
ERIETAKAERKAEADANVFRNEVGTIQPLKAPPRAAAGRTPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYH
RPGVSRDVVRKLRSGAWIVQAQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQK
EEVIAFCEARGNDGGAGAVLVLLQPFAAPGDRGPRAAS
>Mature_278_residues
MQRLFFARAPERACPAYRIMAKNQPHPSDPAKRQIAARPANPAPVAPAPAPDPAALRGQGLAGLGALRKSLQGEADRRDR
ERIETAKAERKAEADANVFRNEVGTIQPLKAPPRAAAGRTPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYH
RPGVSRDVVRKLRSGAWIVQAQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQK
EEVIAFCEARGNDGGAGAVLVLLQPFAAPGDRGPRAAS

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=173, Percent_Identity=30.635838150289, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788671, Length=174, Percent_Identity=30.4597701149425, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 30123; Mature: 30123

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLFFARAPERACPAYRIMAKNQPHPSDPAKRQIAARPANPAPVAPAPAPDPAALRGQG
CCCCCCCCCCCCCCCHHEEHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
LAGLGALRKSLQGEADRRDRERIETAKAERKAEADANVFRNEVGTIQPLKAPPRAAAGRT
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYHRPGVSRDVVRKLRSGAWIVQ
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEE
AQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQK
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
EEVIAFCEARGNDGGAGAVLVLLQPFAAPGDRGPRAAS
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MQRLFFARAPERACPAYRIMAKNQPHPSDPAKRQIAARPANPAPVAPAPAPDPAALRGQG
CCCCCCCCCCCCCCCHHEEHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
LAGLGALRKSLQGEADRRDRERIETAKAERKAEADANVFRNEVGTIQPLKAPPRAAAGRT
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYHRPGVSRDVVRKLRSGAWIVQ
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEE
AQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQK
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
EEVIAFCEARGNDGGAGAVLVLLQPFAAPGDRGPRAAS
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA