| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is btuB [H]
Identifier: 78048286
GI number: 78048286
Start: 3103784
End: 3106600
Strand: Reverse
Name: btuB [H]
Synonym: XCV2730
Alternate gene names: 78048286
Gene position: 3106600-3103784 (Counterclockwise)
Preceding gene: 78048287
Following gene: 78048285
Centisome position: 59.99
GC content: 64.29
Gene sequence:
>2817_bases ATGTCGTCCAGCCGCCCTGCTGTTGTTCCCAAACGACGCGTCTTGCAGACCACCCGGCTCGTCAACGCGCTGCTGTTTGC ACTGGCGGTCGCCGCCGTGCCGGCCGCCGCGCAACAGCGTGGCGATGGTGCAGACGAAGCCACCCAGACGCTGGATCAGA TCAACGTCACCGGCACCCATCTGCGCCGCGTCGACGCCGAAACCGCCAGCCCGGTCGTGGTGATCGACCGGCAGCGTATC GAAGACAGCGGGCAGAACACGCTGGGGCAGCTGCTGCAGCGCTTGCCGATGATGGCCGGCTTCCAGACCGGGCCTGCGCT CAACTCCAACTTCAGTCACGGCCGCGCGCTGGTGTCGCTCCGCAATCTCGGGCCCGAGCGCACGTTGGTGCTGGTCAACG GCCATCGCATGGCAGGGCCTGCCAGCAGCGTGGCGTCGGCGCCCGGCGTGGACGTCAACGCAATCCCCGCCGCGATGGTG GAGCGCGTGGAAGTGCTCACCGATGGAGCGTCGTCGGTATACGGCTCCGATGCGATCGGCGGCGTGGTCAATGTCATCCT CAAGGACAAGTACGACGGATTCGCCGCCACCGCGGACTACGCGCAGAGTACGCATGGCGATGCCAATCGACGCACGCTCG GGCTGGAATGGGGCAAGACCTGGGACCGCGGTGGGCTGATCGTGGGGCTCAGCCAAAACTCGATGAACCCGGTGTTCAAT CGCGACCGCAGTTATGCGGCCAAGGCGGTGGAATATCTCGATGGGCAGGTCAGCGAGGTTCGCGGCGCCAACACCCGTGC CTTCCTGACCGACGGGCGCGTGCTGACGCCGGTGGACGGCGTCGCGCCGGGTCCGGTCGGCGAAGAGGCTTTTCGCCCCT ACAATCGCGCCACCGACAGCTACAACGTCTACGACGCGCAGTACCTGATCACCCCGATCAAGCGCACCAATGCCTCGCTG CACGGCAGTTTCGACTTCACCCCCAGCGTGCAGGGCTACATGGACGTGTTCTGGACGCGCAGCAAGACGGTCTCGCGCTT GGATGCCTACGGGCTGGAAATGCCGGACGCGGTAGACAACTACTACAACCCGTTCGGCGATCAACTGGACGCCTACTATC TGCGCTCGCCGCAGGCCAACACGCGCGTCTACACCTCCACCATGTTCCAGACCAATGTCGTGGCCGGCGTGCGCGGGCGC GTGGACGGCAGCAGTTGGCAGTGGGATGCGGCGGCCGGCCATGCGCGCTACAAGGACACCTTGGTGCGCACCGGTTTTTC GATCACCTCGGCGTTGAATAACGCGGTAGGCGCTTCGTTCCTGGACAGCGACGGGGTCGTGAAATGCGGCGCGCCGGGCG CCGTGATCGTCGGCTGCACGCCGATCAATGTTTTCAACCCCAGCGACCCGGCCACCATCGCCGCATTGCGTGGCACGCAG CGGCCGGTGGATCTGATCGACGAAAGCCAGATGCGCTTTGTCGATATCAGCGCCAATGGCGATCTGTTCAAGCTGCCGGC CGGAAGGGTGCAGGCGGCCGTCGGCCTGGTGTATCGCACCAACAAGTTCGCGCAGGGGACGACCAGCGACGTGGCCGCTG CCGATGCCGATGGCAATTGCGACTACAACGATGGCTGCATCCTCAAGCAGGGGCGCGAGGAGTCGGTCAGGGAAGCCTAT GCGGAATTGCTGGTGCCGCTGCTGAAGGACGTGCCGTTCGCCAACGTGTTGAACCTGAACCTGGGCTCGCGCTATTCCAA CTACGACGCCTGGGGCAACACCACCAACAGCAAGGTTGCGATCGAATGGCGGCCGATTGCGAATCTCTTGGTGCGTGCCA CCGGCTCGCAGGTGTTCAGGGCGCCGGCGCTGGGCGATTTGTATGGCTCGCCCTACAACAGCGTGATCGACAACACCGGC GATTTCCAGGACCCGTGCACAGGCTTTACCGGCGCACCCAATCCGGCCTGCGCGAACGTGCCCAACGATGGCAGCTTCAC CAACGCCGCGCAGTTCAACGTGGTGACCTCCGGCGCCAATAACGTGGGCTTCAAGCTCAAGCCCGAGCGTGGCCGCTCCT ACAATGTCGGGTTGGTCTATGACCCGGATCAGGTGCGCCGGCTGTCGCTCAACGTCGACAGCTGGCGGGTCGTGCTGGAC GACATGCTGACCGGTGTCGGATATCAGCAGGTCGTCAGCGATTGCTTCGACGGCAGCGAAGCGGCCTTCTGTCCGCTGAT TCAGCGCAATGCCACCGGACAGCTGACGCGGGTGTCGGTGCCGTTCGCGTACAACAGCGGCAAGGTCGATATTCGCGGCT ACGACGCCGGCATTCATTACACGCTGGCCGACACCGCCTGGGGCACGTTTGCGACGGGGCTGGATGCAACGTTCTTCTCC AGCTATCGCTTTGCGGGCGATCCGCATAATTACGTCGGCGAAAATTCCAGCTGGGGCAACATGCCGCGCTGGCGTGCCGT GGCCAATCTGGCCTGGGACAATGGCCCGTGGCATGCGAGCTGGAACGCCCGTTACCTGGGCCGCACGGTCAACGGTAGCC AGTACGAAAATTTCTGCGTCGACACCAATGCCGATGGCAGTTGCGCGTATTTCCCGATTGGCTCGGTGGTGTATCACGAC GCCTCGCTGAGCCGGAAGGTCGCATCGCTGCATAGCACGCTGGCGGTGGGCGTCGACAATCTGGGCGACCGCAAGCCGCC ACGGTTCTACAGCTACTCCAATGCGGCCAATACCGAAGCGAGCACCTACGACACGCTCGGGCGCTATGTCTGGAGCCGGC TGCGAGTGGAGTTCTAG
Upstream 100 bases:
>100_bases GTGATCGTTCCCTCCATCTGTGCGCCGCGGCGGTGCGGCTTGGCCGTGCGCGGTCATGCAGGAAGGTGGGCCGTACCCTG TGTCAGTACAAGGATTTCCG
Downstream 100 bases:
>100_bases CACGTCTAGAAAGGCAGCCGGCAGGGGTTAGGCAGAGTAGGCGGTGCATCTGCAACGCAGTGGACGCGCGGGACATGCCG CATCGAGCGACGCTGCGTGG
Product: TonB-dependent outer membrane receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 938; Mature: 937
Protein sequence:
>938_residues MSSSRPAVVPKRRVLQTTRLVNALLFALAVAAVPAAAQQRGDGADEATQTLDQINVTGTHLRRVDAETASPVVVIDRQRI EDSGQNTLGQLLQRLPMMAGFQTGPALNSNFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMV ERVEVLTDGASSVYGSDAIGGVVNVILKDKYDGFAATADYAQSTHGDANRRTLGLEWGKTWDRGGLIVGLSQNSMNPVFN RDRSYAAKAVEYLDGQVSEVRGANTRAFLTDGRVLTPVDGVAPGPVGEEAFRPYNRATDSYNVYDAQYLITPIKRTNASL HGSFDFTPSVQGYMDVFWTRSKTVSRLDAYGLEMPDAVDNYYNPFGDQLDAYYLRSPQANTRVYTSTMFQTNVVAGVRGR VDGSSWQWDAAAGHARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIVGCTPINVFNPSDPATIAALRGTQ RPVDLIDESQMRFVDISANGDLFKLPAGRVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAY AELLVPLLKDVPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVIDNTG DFQDPCTGFTGAPNPACANVPNDGSFTNAAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDQVRRLSLNVDSWRVVLD DMLTGVGYQQVVSDCFDGSEAAFCPLIQRNATGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFATGLDATFFS SYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNARYLGRTVNGSQYENFCVDTNADGSCAYFPIGSVVYHD ASLSRKVASLHSTLAVGVDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF
Sequences:
>Translated_938_residues MSSSRPAVVPKRRVLQTTRLVNALLFALAVAAVPAAAQQRGDGADEATQTLDQINVTGTHLRRVDAETASPVVVIDRQRI EDSGQNTLGQLLQRLPMMAGFQTGPALNSNFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMV ERVEVLTDGASSVYGSDAIGGVVNVILKDKYDGFAATADYAQSTHGDANRRTLGLEWGKTWDRGGLIVGLSQNSMNPVFN RDRSYAAKAVEYLDGQVSEVRGANTRAFLTDGRVLTPVDGVAPGPVGEEAFRPYNRATDSYNVYDAQYLITPIKRTNASL HGSFDFTPSVQGYMDVFWTRSKTVSRLDAYGLEMPDAVDNYYNPFGDQLDAYYLRSPQANTRVYTSTMFQTNVVAGVRGR VDGSSWQWDAAAGHARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIVGCTPINVFNPSDPATIAALRGTQ RPVDLIDESQMRFVDISANGDLFKLPAGRVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAY AELLVPLLKDVPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVIDNTG DFQDPCTGFTGAPNPACANVPNDGSFTNAAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDQVRRLSLNVDSWRVVLD DMLTGVGYQQVVSDCFDGSEAAFCPLIQRNATGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFATGLDATFFS SYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNARYLGRTVNGSQYENFCVDTNADGSCAYFPIGSVVYHD ASLSRKVASLHSTLAVGVDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF >Mature_937_residues SSSRPAVVPKRRVLQTTRLVNALLFALAVAAVPAAAQQRGDGADEATQTLDQINVTGTHLRRVDAETASPVVVIDRQRIE DSGQNTLGQLLQRLPMMAGFQTGPALNSNFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVE RVEVLTDGASSVYGSDAIGGVVNVILKDKYDGFAATADYAQSTHGDANRRTLGLEWGKTWDRGGLIVGLSQNSMNPVFNR DRSYAAKAVEYLDGQVSEVRGANTRAFLTDGRVLTPVDGVAPGPVGEEAFRPYNRATDSYNVYDAQYLITPIKRTNASLH GSFDFTPSVQGYMDVFWTRSKTVSRLDAYGLEMPDAVDNYYNPFGDQLDAYYLRSPQANTRVYTSTMFQTNVVAGVRGRV DGSSWQWDAAAGHARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIVGCTPINVFNPSDPATIAALRGTQR PVDLIDESQMRFVDISANGDLFKLPAGRVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAYA ELLVPLLKDVPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVIDNTGD FQDPCTGFTGAPNPACANVPNDGSFTNAAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDQVRRLSLNVDSWRVVLDD MLTGVGYQQVVSDCFDGSEAAFCPLIQRNATGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFATGLDATFFSS YRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNARYLGRTVNGSQYENFCVDTNADGSCAYFPIGSVVYHDA SLSRKVASLHSTLAVGVDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=167, Percent_Identity=32.3353293413174, Blast_Score=68, Evalue=3e-12, Organism=Escherichia coli, GI1788478, Length=155, Percent_Identity=32.258064516129, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 101370; Mature: 101238
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSRPAVVPKRRVLQTTRLVNALLFALAVAAVPAAAQQRGDGADEATQTLDQINVTGTH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCHHH LRRVDAETASPVVVIDRQRIEDSGQNTLGQLLQRLPMMAGFQTGPALNSNFSHGRALVSL HEEECCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEH RNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVERVEVLTDGASSVYGSDAIG HHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHH GVVNVILKDKYDGFAATADYAQSTHGDANRRTLGLEWGKTWDRGGLIVGLSQNSMNPVFN HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHC RDRSYAAKAVEYLDGQVSEVRGANTRAFLTDGRVLTPVDGVAPGPVGEEAFRPYNRATDS CCHHHHHHHHHHHCCHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCHHHHCCHHCCCCC YNVYDAQYLITPIKRTNASLHGSFDFTPSVQGYMDVFWTRSKTVSRLDAYGLEMPDAVDN CEEEEEEEEEEEHHHCCCCEECCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHH YYNPFGDQLDAYYLRSPQANTRVYTSTMFQTNVVAGVRGRVDGSSWQWDAAAGHARYKDT HCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHEEECCCCCCCCCCEEECCCCCCCHHHHH LVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIVGCTPINVFNPSDPATIAALRGTQ HHHCCCHHHHHHHHHHCCCEECCCCEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCC RPVDLIDESQMRFVDISANGDLFKLPAGRVQAAVGLVYRTNKFAQGTTSDVAAADADGNC CCHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHEEEEECCCCCCCCCCCCEECCCCCCC DYNDGCILKQGREESVREAYAELLVPLLKDVPFANVLNLNLGSRYSNYDAWGNTTNSKVA CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEE IEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVIDNTGDFQDPCTGFTGAPNPACANV EEEEHHHHHHHHCCCCHHEECCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PNDGSFTNAAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDQVRRLSLNVDSWRVVLD CCCCCCCCCEEEEEEECCCCCCCEEECCCCCCEEEEEEEECHHHHEEEEECCCHHHHHHH DMLTGVGYQQVVSDCFDGSEAAFCPLIQRNATGQLTRVSVPFAYNSGKVDIRGYDAGIHY HHHHCCCHHHHHHHHCCCCCCEECHHHHCCCCCCEEEEEEEEEECCCEEEEEEECCCEEE TLADTAWGTFATGLDATFFSSYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHAS EEECCCCCHHHHCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHEEECCCCCEECC WNARYLGRTVNGSQYENFCVDTNADGSCAYFPIGSVVYHDASLSRKVASLHSTLAVGVDN CCCEEEEEECCCCCCCCEEEECCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHHCCCC LGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSSRPAVVPKRRVLQTTRLVNALLFALAVAAVPAAAQQRGDGADEATQTLDQINVTGTH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCHHH LRRVDAETASPVVVIDRQRIEDSGQNTLGQLLQRLPMMAGFQTGPALNSNFSHGRALVSL HEEECCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEH RNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVERVEVLTDGASSVYGSDAIG HHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHH GVVNVILKDKYDGFAATADYAQSTHGDANRRTLGLEWGKTWDRGGLIVGLSQNSMNPVFN HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHC RDRSYAAKAVEYLDGQVSEVRGANTRAFLTDGRVLTPVDGVAPGPVGEEAFRPYNRATDS CCHHHHHHHHHHHCCHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCHHHHCCHHCCCCC YNVYDAQYLITPIKRTNASLHGSFDFTPSVQGYMDVFWTRSKTVSRLDAYGLEMPDAVDN CEEEEEEEEEEEHHHCCCCEECCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHH YYNPFGDQLDAYYLRSPQANTRVYTSTMFQTNVVAGVRGRVDGSSWQWDAAAGHARYKDT HCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHEEECCCCCCCCCCEEECCCCCCCHHHHH LVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIVGCTPINVFNPSDPATIAALRGTQ HHHCCCHHHHHHHHHHCCCEECCCCEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCC RPVDLIDESQMRFVDISANGDLFKLPAGRVQAAVGLVYRTNKFAQGTTSDVAAADADGNC CCHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHEEEEECCCCCCCCCCCCEECCCCCCC DYNDGCILKQGREESVREAYAELLVPLLKDVPFANVLNLNLGSRYSNYDAWGNTTNSKVA CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEE IEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVIDNTGDFQDPCTGFTGAPNPACANV EEEEHHHHHHHHCCCCHHEECCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PNDGSFTNAAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDQVRRLSLNVDSWRVVLD CCCCCCCCCEEEEEEECCCCCCCEEECCCCCCEEEEEEEECHHHHEEEEECCCHHHHHHH DMLTGVGYQQVVSDCFDGSEAAFCPLIQRNATGQLTRVSVPFAYNSGKVDIRGYDAGIHY HHHHCCCHHHHHHHHCCCCCCEECHHHHCCCCCCEEEEEEEEEECCCEEEEEEECCCEEE TLADTAWGTFATGLDATFFSSYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHAS EEECCCCCHHHHCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHEEECCCCCEECC WNARYLGRTVNGSQYENFCVDTNADGSCAYFPIGSVVYHDASLSRKVASLHSTLAVGVDN CCCEEEEEECCCCCCCCEEEECCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHHCCCC LGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA