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The map label for this gene is lysM [H]

Identifier: 78048253

GI number: 78048253

Start: 3054105

End: 3054536

Strand: Reverse

Name: lysM [H]

Synonym: XCV2697

Alternate gene names: 78048253

Gene position: 3054536-3054105 (Counterclockwise)

Preceding gene: 78048255

Following gene: 78048252

Centisome position: 58.99

GC content: 67.82

Gene sequence:

>432_bases
GTGAAGATCACCCCCTCCGACGAACGCCTGTTGTCGCTGCTGCGCGAGGACGCGCGCGCCTCCACCGCCCAGATCGCGCG
GCGACTCGGGCTCTCGCGCACGACCGTGCAGAGCCGCATCGAAAAGCTCGAACGCGACGGCGTGATCAGCGGCTACACCG
TGCGCACGCATGACGACTACGAGCAGGGCCGCATCCGTGCGCACATCCTGATCACCGTGCTGCCCAAGAAGATGCCGGCC
GTGGTGAAGGCGCTGCGCGATATCCCGGAAGTGCGCCTGCTGCACTCGGTCAGCGGTGCCTACGACCTGGTCGCCCTGGG
CGTGGTCGGCGGCGTCAACGAGATGGACGTGCTCACCGACGCCATCGGCGCCATCGACGGCGTGGAGCGCACGACCAGCG
CGATCATCCTGTCGACCAAGTTCGAGCGGTGA

Upstream 100 bases:

>100_bases
CGTTCCCTTTCTATTATCGGCAGAAGATCGGCGTTTGGCAGCGTGAATCTGGGCAGGAAGTACGATATTTTCGGCGATTC
GCCGAAACGAATGCACAATA

Downstream 100 bases:

>100_bases
ATCGGGAATCGGGAATCGGGAATCGTAAGAGCAGCGAATCGGGGGCGGAAAGGCGACGATGAAGCGCTGCCGCCCGTCCG
ATTCCCCATTCCCAATTCTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKITPSDERLLSLLREDARASTAQIARRLGLSRTTVQSRIEKLERDGVISGYTVRTHDDYEQGRIRAHILITVLPKKMPA
VVKALRDIPEVRLLHSVSGAYDLVALGVVGGVNEMDVLTDAIGAIDGVERTTSAIILSTKFER

Sequences:

>Translated_143_residues
MKITPSDERLLSLLREDARASTAQIARRLGLSRTTVQSRIEKLERDGVISGYTVRTHDDYEQGRIRAHILITVLPKKMPA
VVKALRDIPEVRLLHSVSGAYDLVALGVVGGVNEMDVLTDAIGAIDGVERTTSAIILSTKFER
>Mature_143_residues
MKITPSDERLLSLLREDARASTAQIARRLGLSRTTVQSRIEKLERDGVISGYTVRTHDDYEQGRIRAHILITVLPKKMPA
VVKALRDIPEVRLLHSVSGAYDLVALGVVGGVNEMDVLTDAIGAIDGVERTTSAIILSTKFER

Specific function: In the absence or at low concentrations of lysine, activates the biosynthesis of this amino acid via the diaminopimelate pathway [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15734; Mature: 15734

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITPSDERLLSLLREDARASTAQIARRLGLSRTTVQSRIEKLERDGVISGYTVRTHDDY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECCCCH
EQGRIRAHILITVLPKKMPAVVKALRDIPEVRLLHSVSGAYDLVALGVVGGVNEMDVLTD
HHCCEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
AIGAIDGVERTTSAIILSTKFER
HHHHHCCHHHHHHEEEEEECCCC
>Mature Secondary Structure
MKITPSDERLLSLLREDARASTAQIARRLGLSRTTVQSRIEKLERDGVISGYTVRTHDDY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECCCCH
EQGRIRAHILITVLPKKMPAVVKALRDIPEVRLLHSVSGAYDLVALGVVGGVNEMDVLTD
HHCCEEEEEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
AIGAIDGVERTTSAIILSTKFER
HHHHHCCHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726; 12042311 [H]