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The map label for this gene is secD [H]

Identifier: 78048249

GI number: 78048249

Start: 3049133

End: 3050977

Strand: Reverse

Name: secD [H]

Synonym: XCV2693

Alternate gene names: 78048249

Gene position: 3050977-3049133 (Counterclockwise)

Preceding gene: 78048250

Following gene: 78048248

Centisome position: 58.92

GC content: 64.07

Gene sequence:

>1845_bases
ATGCTCGAATTTCCTCGCTGGAAGTACTTCCTGATCCTGCTGGTACTGGCCGTCAGCGCGCTGTATGCGTTGCCCAACGT
GTACCAGAAGGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTCGACGACGCATTGCGCAGCCGCATCGACG
GTGAGCTCAAGAGCGCCGGCATCACCCAGAAGGCGATCACAAAAGAAGGCGACAGCCTGATGGTGCGGTTGCCTTCGCTG
CAGGCGCAGACACGCGCCAACGACGTGTTGCGTCAGCAGCTGGGCGAGAACTACACCGTGGCGCTGAACCTGGCCTCCAC
CGTGCCGGACTGGCTGGCCAAGCTGGGCGGCCGGCCGATGGTGCTGGGTCTGGACCTGGTGGGCGGCGTGCACTTCGCCA
TGCAGGTCGACCAGAAGGCCGCGCTGGAAAAGCGCCTGGACGGGTTTGCCGAAGACATCCGCACCACCTTGCGCGATGCG
CGTATCCCGTATCGCTCGGTGGAACGTCGCGCTGACAACAGTATCCAGGTCAACCTGGGCGAGGGCGCCAATGCCGACGC
CGCGCGCGTGACGCTGGCCAAGGCGCAGCCGACCCTGACCTACGACGTCAGCGGCCAGAACATCGCCGTGAAGGTGCCGG
AGGCCGAGCTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTGCGCAACCGCGTCAACGCACTGGGC
GTGTCCGAGCCGACCATCCAGCGCCAGGGCGAGGACCGCATCGTGGTCGAACTGCCCGGTCTGCAGGACACCGCCGAAGC
CAAGCGCCTGATCGGTGCCACCGCCTCGCTGGAATTCCGCGCCGTGGTCGACGGTAATGCCGACGATGCCGTGCGCAGCG
GCAACATTCCGCCGGAGGCCAAGGTCTATCGCCTGCGCGACAGCAACGCGCCGGTGTTGTTGAACAAGCGCGCGCTGGTG
ACCGGCGACCAGATGGTCAGCGCATCGGTCAGCACCGACCAGAACGGCATGCCGGCAGTGGCGGTGACGCTCAACAACGT
CGCCGGCCAGCGCATGTTCGACTACACCAGCGCCAACGTCGGCAAGCTGATGTCGGTGGTCTACATCGAGCGCATTCCCA
CCGTGACCATGGTCGACGGCAAGGAAGTGCGCAGCGTACGGGTCAAGGAAGAAGCCTTGTCGCCGACCCGCATTGCCGGC
GTGTTCGGCAAGAACTTCCAGACCACCGGTCTGGAAAAGACCGAAGCCGAGAACCTGGCCAAGCTGCTGAAATCCGGCTC
GCTGGCCGCACCGATGGATTTCGTCGAGGAATACGTGATCGGCCCGAGCCTGGGTGCGGAGAACGTGGAGCGCGGCGTCA
CGGCGGTGGTCTACTCGTTCCTGTTTACGCTGGTGTTCTTCACCATCTACTACCGCGTGTTCGGCGCGATCACCTCGGTG
GCGCTGCTGTTCAACCTGCTGATCGTAGTGGCGGTGATGTCGCTGTTCGGTGCCACCATGACATTGCCGGGCTTTGCTGG
CCTGGCGCTATCGGTCGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTATCCGCGAAGAGTTGCGCCTGGGCG
TACCGGCCAAGTCGGCGATTGCGGCCGGTTACGAAAAGGCCGGTGGCACCATCCTCGATGCCAACCTCACTGGGCTGATC
GTGGCAGTGGCCCTGTATGCGTTCGGTACCGGCCCGCTGAAGGGCTTCGCGCTGACCATGATGATCGGTATTTTCGCCTC
GATGTTCACCGCGATCACGGTCTCGCGTGCGCTGGCGGTGTTGATCTACGGCAGCCGCAAGAAGCTGAAGTCTGTCGCTA
TTTAA

Upstream 100 bases:

>100_bases
CGTATCCATCTGAAGACCATTGGCGACGTTGTACCGGTCGCTTGAAGTCGTTCTCACTGCTAGGCGCGGCGCCGGGATGG
TGCCACGCGGGACTGTCGCA

Downstream 100 bases:

>100_bases
TGCGAGTCCCTCGCAAGAGCCCGTCTGTAATGCGAGTCCCTCGCGAGAGCCCGCACATCCATGTGCGGACTGCTTAGGAA
GATCTTTCAATGAAAATTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITQKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGANADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAG
VFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Sequences:

>Translated_614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITQKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGANADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAG
VFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI
>Mature_614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITQKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGANADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAG
VFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=619, Percent_Identity=41.8416801292407, Blast_Score=475, Evalue=1e-135,
Organism=Escherichia coli, GI1786610, Length=175, Percent_Identity=29.7142857142857, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65930; Mature: 65930

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAG
CCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCC
ITQKAITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPM
CCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQVNLG
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEC
EGANADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
CCCCCCHHEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEA
CCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCC
KVYRLRDSNAPVLLNKRALVTGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMFDYTSANV
EEEEEECCCCCEEEECCEEECCCHHEEEECCCCCCCCCEEEEEECHHCCCHHHHCCCCCH
GKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLA
HHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
AAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAV
HHCHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYGSRKKLKSVAI
EEECCHHHHHHCCC
>Mature Secondary Structure
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAG
CCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCC
ITQKAITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPM
CCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQVNLG
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEC
EGANADAARVTLAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
CCCCCCHHEEEEEECCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEA
CCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCC
KVYRLRDSNAPVLLNKRALVTGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMFDYTSANV
EEEEEECCCCCEEEECCEEECCCHHEEEECCCCCCCCCEEEEEECHHCCCHHHHCCCCCH
GKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLA
HHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
AAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAV
HHCHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYGSRKKLKSVAI
EEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]