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The map label for this gene is ycfD [H]

Identifier: 78047136

GI number: 78047136

Start: 1784884

End: 1786371

Strand: Reverse

Name: ycfD [H]

Synonym: XCV1580

Alternate gene names: 78047136

Gene position: 1786371-1784884 (Counterclockwise)

Preceding gene: 78047137

Following gene: 78047135

Centisome position: 34.5

GC content: 68.62

Gene sequence:

>1488_bases
ATGGCCGTACGTAAAGCGACCCCACTTGCCATCGAAGTCCAGGCCCGTCCGGGACAGCCGCTGGGCATGCCGGTCGAGCG
TTTCCTGCGCAATTACTGGCACAAGCACCCGCTGTTGATCCGCAATGCGTTCGCGGATTTCGCCTCGCCGCTGCAGCCGG
AAGACCTGGCCGGGCTGGCCTGCGAAGACGGCGTGCTGGCGCGCCTGATCAGCCACGACCGCGCCACCGACGGCTGGGAC
GTGCGCACCGGCCCGTTCCAGGAAACCGATTTCCCCGGCCTGCCCGACCATGACTGGACCTTGCTGGTGCAGGACGTGGA
CAAATGGGACGCCGACGTGCGTGCCCTGCTGGAGCACTTCCGCTTCCTGCCGCGCTGGCGCATCGACGACATCATGATCA
GCTTCGCCGCCACCGGTGGTTCGGTGGGCGCGCACGTCGACCATTACGACGTGTTCCTGCTGCAGGGCCAGGGCCACCGC
CGCTGGCAGATCGATGCGCGCACCGTCCAGGGCCGCAAGGCCACGCCGCTGGCGTTCCGCGACGATGTCGAGCTCAAGCT
GCTGCGCGAGTTCAAGCCCACCCACGATTGGGTGCTGGGCCCGGGCGACATGCTCTACCTGCCGCCGCTGATCCCGCACC
ACGGCGTGGCCGAAGACGCCTGCCTGACCTTCTCCATCGGCACCCGCGCACCGTCCTCGGCCGAGCTGATCGGCGATTAC
CTGGACACCTTGATTGCCGATGCAGACGATGCCGTGCGCTATCACGACCAAGACCTCAAGGTGCCGGCCGACCCCTACGA
GATCGACGTCACCGCGATGAACCGCGTGGTCGCTGCGCTCAATGCGCTGCGCATGAACGACCCCGACCGTCTGGGCGACT
GGTTCGGCCGCTTCATGACCACCTACCGCGCCTCCGGCGACGTGGTGCCGGCGCCCGAGCCAATCCCGCGCGAAGCGGTC
GAGCAGGCGCTGGAGGAAGGCGTGCTGCTGCACCGCCACCCGTGGTCGCGACTGGCCTGGCGGCGCGCCAAGCGCGGTGC
CACGCTGTTCTGCAGCGGCCTGGAGTTTGCGCTGTCGGCCAAGGATGCGTCCCGGCTGGCGGCAGCCGAAGAGATCGACG
GCACCTTGTACGCGCAGTTGTCCCCGCGTGGCCGCGAGGTGGTGCTGGAGCTGCTGGCACAGGGCCACTACCAGCGCGCC
CACGAAGATGCCGAGGACGACATCGCAGACGACGACCACGCGCATGCCCTGAGCGTGTCGGCCGACCACGACGACCAAGA
CGCCGACGACGACGCGCCGGAGGCGGACGGGGACATCGATGCCGACGCCGATGTCGAACAGGTTGCCGCCTCTGCCGACA
CCCCGGCAGAGGCGCTGCAGGCCGATGTCGAACCCGGCGACGCCGCCGAAGCCGAGCAGGAAGTCGACAGCGCGATCGCC
GACGAGACCGATTCCGACGACAGCGACGACGCCACCAAGCCTGCATGA

Upstream 100 bases:

>100_bases
CCGCACAGGTGGACATCCGGCGCGGGCAGTCGACAATAGGCCATTGGCGCCGGCCGATGCCGCGCACCACACTCTCTTCT
ACATCGTGTAAGGACCCCAC

Downstream 100 bases:

>100_bases
GCGCGCACGCCAGACCGCAGATCGTCACGCTGGACCCGGCCGCCGACGCCGCGGCGCTGCGTGCGCTGCGGCCGGCCTGT
GCCACTGACACCGCGGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MAVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLACEDGVLARLISHDRATDGWD
VRTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHFRFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHR
RWQIDARTVQGRKATPLAFRDDVELKLLREFKPTHDWVLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDY
LDTLIADADDAVRYHDQDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMTTYRASGDVVPAPEPIPREAV
EQALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSAKDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRA
HEDAEDDIADDDHAHALSVSADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALQADVEPGDAAEAEQEVDSAIA
DETDSDDSDDATKPA

Sequences:

>Translated_495_residues
MAVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLACEDGVLARLISHDRATDGWD
VRTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHFRFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHR
RWQIDARTVQGRKATPLAFRDDVELKLLREFKPTHDWVLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDY
LDTLIADADDAVRYHDQDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMTTYRASGDVVPAPEPIPREAV
EQALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSAKDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRA
HEDAEDDIADDDHAHALSVSADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALQADVEPGDAAEAEQEVDSAIA
DETDSDDSDDATKPA
>Mature_494_residues
AVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLACEDGVLARLISHDRATDGWDV
RTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHFRFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHRR
WQIDARTVQGRKATPLAFRDDVELKLLREFKPTHDWVLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDYL
DTLIADADDAVRYHDQDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMTTYRASGDVVPAPEPIPREAVE
QALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSAKDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRAH
EDAEDDIADDDHAHALSVSADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALQADVEPGDAAEAEQEVDSAIAD
ETDSDDSDDATKPA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=305, Percent_Identity=37.0491803278689, Blast_Score=207, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 54620; Mature: 54489

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLA
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
CEDGVLARLISHDRATDGWDVRTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHH
RFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHRRWQIDARTVQGRKATPLAFR
HHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEC
DDVELKLLREFKPTHDWVLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDY
CCCHHHHHHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
LDTLIADADDAVRYHDQDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMT
HHHHHHCCCHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TYRASGDVVPAPEPIPREAVEQALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSA
HHCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCHHEEEC
KDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRAHEDAEDDIADDDHAHALSVS
CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEE
ADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALQADVEPGDAAEAEQEVDSAIA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
DETDSDDSDDATKPA
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLA
CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
CEDGVLARLISHDRATDGWDVRTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHH
RFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHRRWQIDARTVQGRKATPLAFR
HHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEC
DDVELKLLREFKPTHDWVLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDY
CCCHHHHHHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
LDTLIADADDAVRYHDQDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMT
HHHHHHCCCHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TYRASGDVVPAPEPIPREAVEQALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSA
HHCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCHHEEEC
KDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRAHEDAEDDIADDDHAHALSVS
CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEE
ADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALQADVEPGDAAEAEQEVDSAIA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
DETDSDDSDDATKPA
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]