| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is 78045132
Identifier: 78045132
GI number: 78045132
Start: 870544
End: 871638
Strand: Direct
Name: 78045132
Synonym: CHY_0982
Alternate gene names: NA
Gene position: 870544-871638 (Clockwise)
Preceding gene: 78044274
Following gene: 78044592
Centisome position: 36.25
GC content: 29.59
Gene sequence:
>1095_bases ATGGGAGAAAAAAAACTATCGGTTTGCATGATTGTAAAAGACGAGGAAAGATATATTAGAAATTGCCTTGAGAGTGTGCA AGATATTGCTGATGAAATTGTTGTTGTCGATACGGGATCTACAGATAATACTAAAGCTATAGCTAATGATTTTGGGGCGA AAATTTTTGATTTTCCGTGGGTTGATGATTTCAGTGCAGCAAGGAACTTTTCGTTGGAAAAAGCAACAGGTGATTGGGTT TTACTTTTAGATGCTGATGAAGAATTAGATGTTAGTAGCAAGGATAAAGTGTTGGAGCTAGTTAATAAAAATGAAAATGT TGCTTATTTAGTCAATGTAATTAATTTCCTGGATTTTACAAAACAAAGAACAGTTACAGCCAAAAGAATGCTTTTATTTC CTATGCGAGCTGAACCATACTTTATTAATCCTATTCACGAGCAACTACGTTTCAAAAAAAATGTTGAAATTAGAGATAGT ACCATTATTATAAAACACTACGGTTATATTCCAGAAACTGTTTCTACTAAAAAGAAAAGTGAGCGGAATATATCAATTCT TAAAAAAATAGCCAATAACTCTGTTGAAAATATTAATGTTGAAATTAAAGCATTCAATTATTACAATCTTGGTGTAGAGT ATTATAGAAAACAAGAATACGAAAAAGCTTTACAAAATTTCCAAAAGTCTTTTTTATTGATACGTAAAAAAGAACCAGGC TTTAAGTATGCTTTAATTTGGCATATTGTTAATTCATTAATAAATTTAAAAAAATTTCAAGAGGCTTTAAAGGTTATTGA AGATGCCGAACAGTTATATCCTTGGTATGTTGATTTAGTGTATTTTAAAGGAGTTGTTTATTATAGTCAAAGAAGCTATA AGAAAGCTATTGAAACTTTTATGAAATGTCTCGAAATTGGTGAAAGCTTAGAAACTTCAATATTTCATTATGATGGTACT GGTTCTTATTTAGCAAGTTATGGAATTGGTAGTTGCGAAGAAGCTTTAGGCAATTATAATAAAGCTTTAGTTTTTTATGA AATGTCTTTGGCACAAAATTATATTTTAGCTGTAATCCCTATTTTGAAGTTGTAA
Upstream 100 bases:
>100_bases AGCGGTTTTACAGCTTCTCCGATAAACAAATACATTTTATCTTTTGGGCCAGCCATTTTAAGGGCTGGCCTCTTTAAAAT TTGCTTAAAGTGGTGAAAAA
Downstream 100 bases:
>100_bases TATGAACGGGGGAGTTACCGTGAATTGGAAGAAAAGGAAGATAAATTACTTCGAAAATATAAGGACTATTCTTTTATAAT CGAAAAATACGTTGATTTTC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MGEKKLSVCMIVKDEERYIRNCLESVQDIADEIVVVDTGSTDNTKAIANDFGAKIFDFPWVDDFSAARNFSLEKATGDWV LLLDADEELDVSSKDKVLELVNKNENVAYLVNVINFLDFTKQRTVTAKRMLLFPMRAEPYFINPIHEQLRFKKNVEIRDS TIIIKHYGYIPETVSTKKKSERNISILKKIANNSVENINVEIKAFNYYNLGVEYYRKQEYEKALQNFQKSFLLIRKKEPG FKYALIWHIVNSLINLKKFQEALKVIEDAEQLYPWYVDLVYFKGVVYYSQRSYKKAIETFMKCLEIGESLETSIFHYDGT GSYLASYGIGSCEEALGNYNKALVFYEMSLAQNYILAVIPILKL
Sequences:
>Translated_364_residues MGEKKLSVCMIVKDEERYIRNCLESVQDIADEIVVVDTGSTDNTKAIANDFGAKIFDFPWVDDFSAARNFSLEKATGDWV LLLDADEELDVSSKDKVLELVNKNENVAYLVNVINFLDFTKQRTVTAKRMLLFPMRAEPYFINPIHEQLRFKKNVEIRDS TIIIKHYGYIPETVSTKKKSERNISILKKIANNSVENINVEIKAFNYYNLGVEYYRKQEYEKALQNFQKSFLLIRKKEPG FKYALIWHIVNSLINLKKFQEALKVIEDAEQLYPWYVDLVYFKGVVYYSQRSYKKAIETFMKCLEIGESLETSIFHYDGT GSYLASYGIGSCEEALGNYNKALVFYEMSLAQNYILAVIPILKL >Mature_363_residues GEKKLSVCMIVKDEERYIRNCLESVQDIADEIVVVDTGSTDNTKAIANDFGAKIFDFPWVDDFSAARNFSLEKATGDWVL LLDADEELDVSSKDKVLELVNKNENVAYLVNVINFLDFTKQRTVTAKRMLLFPMRAEPYFINPIHEQLRFKKNVEIRDST IIIKHYGYIPETVSTKKKSERNISILKKIANNSVENINVEIKAFNYYNLGVEYYRKQEYEKALQNFQKSFLLIRKKEPGF KYALIWHIVNSLINLKKFQEALKVIEDAEQLYPWYVDLVYFKGVVYYSQRSYKKAIETFMKCLEIGESLETSIFHYDGTG SYLASYGIGSCEEALGNYNKALVFYEMSLAQNYILAVIPILKL
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00535 Glycos_transf_2; PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 42202; Mature: 42071
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEKKLSVCMIVKDEERYIRNCLESVQDIADEIVVVDTGSTDNTKAIANDFGAKIFDFPW CCCCCEEEEEEEECHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHCCCEECCCC VDDFSAARNFSLEKATGDWVLLLDADEELDVSSKDKVLELVNKNENVAYLVNVINFLDFT CCCHHHHHCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH KQRTVTAKRMLLFPMRAEPYFINPIHEQLRFKKNVEIRDSTIIIKHYGYIPETVSTKKKS HHHHHHHHHHEEEECCCCCEEECHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHC ERNISILKKIANNSVENINVEIKAFNYYNLGVEYYRKQEYEKALQNFQKSFLLIRKKEPG CCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCC FKYALIWHIVNSLINLKKFQEALKVIEDAEQLYPWYVDLVYFKGVVYYSQRSYKKAIETF CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH MKCLEIGESLETSIFHYDGTGSYLASYGIGSCEEALGNYNKALVFYEMSLAQNYILAVIP HHHHHHCCCHHHEEEEECCCCHHHHHCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHH ILKL HHCC >Mature Secondary Structure GEKKLSVCMIVKDEERYIRNCLESVQDIADEIVVVDTGSTDNTKAIANDFGAKIFDFPW CCCCEEEEEEEECHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHCCCEECCCC VDDFSAARNFSLEKATGDWVLLLDADEELDVSSKDKVLELVNKNENVAYLVNVINFLDFT CCCHHHHHCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH KQRTVTAKRMLLFPMRAEPYFINPIHEQLRFKKNVEIRDSTIIIKHYGYIPETVSTKKKS HHHHHHHHHHEEEECCCCCEEECHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHC ERNISILKKIANNSVENINVEIKAFNYYNLGVEYYRKQEYEKALQNFQKSFLLIRKKEPG CCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCC FKYALIWHIVNSLINLKKFQEALKVIEDAEQLYPWYVDLVYFKGVVYYSQRSYKKAIETF CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHH MKCLEIGESLETSIFHYDGTGSYLASYGIGSCEEALGNYNKALVFYEMSLAQNYILAVIP HHHHHHCCCHHHEEEEECCCCHHHHHCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHH ILKL HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8123787 [H]