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The map label for this gene is ymdB [H]

Identifier: 78044516

GI number: 78044516

Start: 1043459

End: 1044241

Strand: Direct

Name: ymdB [H]

Synonym: CHY_1170

Alternate gene names: 78044516

Gene position: 1043459-1044241 (Clockwise)

Preceding gene: 78044863

Following gene: 78042997

Centisome position: 43.45

GC content: 44.57

Gene sequence:

>783_bases
ATGGCTTTGAATATTTTAATACTCGGGGATATAGTAGGACGGGTGGGACGCCGAGGGGTTAAAGAGGTTATTCCCCGGAT
ACTGGAAAAGCATATGGTAGATTTTATCATTGCCAATGGGGAAAACGCGGCGGGAGGAAATGGTTTAACCCCGGAAATTG
CTCAAGAACTATTTGCCGCAGGAATTAACGTTTTAACGATGGGAAACCACACCTGGGATAAAAAAGAAATATTTACCATA
ATCAATGATGAAGCGCGCATTATTCGTCCGGCGAATTACCCTCCCGGGACCCCGGGACAGGGGTATGGGATTTTTAGGGT
TAATGGGAAAAATGTTGCGGTAGTTAACTTAATGGGACGGGTATTTATGGCCGAGTTGGACTGTCCCTTTCGCAAAATGG
ACGAAATACTTTTAGAACTGCAAGATGTTGATTACATAATTGTAGACTTTCATGCCGAAGCTACTTCGGAGAAAATAGCC
CTTGGCTGGTATCTGGATGGCAGGGTTTCTTTAGTTTTTGGCACCCATACCCATGTTCCGACGGCCGATGAACGGATTTT
ACCCGGGGGAACCGCCTATATTACCGACGTGGGGATGAGTGGGCCGTTAAATTCGGTGATTGGAGTTAAAACTAATTTGG
TACTCCAAAAGTTTTTAACGCAAATGCCTCAAAGATTTGAAAGTGCCAGCGGTCCCTATATTGTTTCCGGAATTTTGGTA
TCCCTGACGGAGGATGGTAAAGCAGAGAATATAACCCGTATTCAGTATATTGAGGGAGAGTAA

Upstream 100 bases:

>100_bases
TAAGTTTACTTTTAGAAAATACCAAACGAAGTTTTTATAACACGGTATTTGCGTTCCGTGAGGAAGGAAGAGTTGTGATA
GCTAATTAGAAACGGAGGAT

Downstream 100 bases:

>100_bases
AGGGGAAATTCCCAGTAAAAATTTAAAAAAAATTTAAAAATAAAAAAGGAAATTTCCCTAAAATAGCGAATATATTGATA
TACCAGATATAGTAAAATAT

Product: Ser/Thr protein phosphatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MALNILILGDIVGRVGRRGVKEVIPRILEKHMVDFIIANGENAAGGNGLTPEIAQELFAAGINVLTMGNHTWDKKEIFTI
INDEARIIRPANYPPGTPGQGYGIFRVNGKNVAVVNLMGRVFMAELDCPFRKMDEILLELQDVDYIIVDFHAEATSEKIA
LGWYLDGRVSLVFGTHTHVPTADERILPGGTAYITDVGMSGPLNSVIGVKTNLVLQKFLTQMPQRFESASGPYIVSGILV
SLTEDGKAENITRIQYIEGE

Sequences:

>Translated_260_residues
MALNILILGDIVGRVGRRGVKEVIPRILEKHMVDFIIANGENAAGGNGLTPEIAQELFAAGINVLTMGNHTWDKKEIFTI
INDEARIIRPANYPPGTPGQGYGIFRVNGKNVAVVNLMGRVFMAELDCPFRKMDEILLELQDVDYIIVDFHAEATSEKIA
LGWYLDGRVSLVFGTHTHVPTADERILPGGTAYITDVGMSGPLNSVIGVKTNLVLQKFLTQMPQRFESASGPYIVSGILV
SLTEDGKAENITRIQYIEGE
>Mature_259_residues
ALNILILGDIVGRVGRRGVKEVIPRILEKHMVDFIIANGENAAGGNGLTPEIAQELFAAGINVLTMGNHTWDKKEIFTII
NDEARIIRPANYPPGTPGQGYGIFRVNGKNVAVVNLMGRVFMAELDCPFRKMDEILLELQDVDYIIVDFHAEATSEKIAL
GWYLDGRVSLVFGTHTHVPTADERILPGGTAYITDVGMSGPLNSVIGVKTNLVLQKFLTQMPQRFESASGPYIVSGILVS
LTEDGKAENITRIQYIEGE

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28451; Mature: 28320

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNILILGDIVGRVGRRGVKEVIPRILEKHMVDFIIANGENAAGGNGLTPEIAQELFAA
CEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHC
GINVLTMGNHTWDKKEIFTIINDEARIIRPANYPPGTPGQGYGIFRVNGKNVAVVNLMGR
CCEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEHHHH
VFMAELDCPFRKMDEILLELQDVDYIIVDFHAEATSEKIALGWYLDGRVSLVFGTHTHVP
HHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCC
TADERILPGGTAYITDVGMSGPLNSVIGVKTNLVLQKFLTQMPQRFESASGPYIVSGILV
CCCCEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
SLTEDGKAENITRIQYIEGE
EEECCCCCCCEEEEEEECCC
>Mature Secondary Structure 
ALNILILGDIVGRVGRRGVKEVIPRILEKHMVDFIIANGENAAGGNGLTPEIAQELFAA
EEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHC
GINVLTMGNHTWDKKEIFTIINDEARIIRPANYPPGTPGQGYGIFRVNGKNVAVVNLMGR
CCEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEHHHH
VFMAELDCPFRKMDEILLELQDVDYIIVDFHAEATSEKIALGWYLDGRVSLVFGTHTHVP
HHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCC
TADERILPGGTAYITDVGMSGPLNSVIGVKTNLVLQKFLTQMPQRFESASGPYIVSGILV
CCCCEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
SLTEDGKAENITRIQYIEGE
EEECCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]