Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
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Accession | NC_007503 |
Length | 2,401,520 |
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The map label for this gene is 78043445
Identifier: 78043445
GI number: 78043445
Start: 1104712
End: 1105818
Strand: Direct
Name: 78043445
Synonym: CHY_1238
Alternate gene names: NA
Gene position: 1104712-1105818 (Clockwise)
Preceding gene: 78042754
Following gene: 78045036
Centisome position: 46.0
GC content: 41.55
Gene sequence:
>1107_bases ATGAGTTCCGAAGTTTATTTTGTGAATGTGCGTGCCCAGAAAGGAGCAAGTTTACTGGAAAAACTGGAACGCTTGATTGA CCGGAGCGGGTTAATGGATATTGTAGCACCAAATGATTTGGTGGCAATTAAGCTTCATTTTGGCGAAAGGGGAAATACCG CTTATATTAGACCTCAATTTATCAGGAGAATAGTTAACAAAGTTAAAGCCAAAAAAGGAAAACCCTTTCTGACCGATGCC AATACCTTGTATGTCGGGAGCAGGGCCAATGCCGTCGATCACCTGGAAACTGCTATTGAAAATGGTTTTGACTATGCTGT AGTGGGTGCTCCCTTAATAATTGCCGATGGTCTTACCGGAAAGGATTACATAAAAGTGCCAGTTAATTTAAAACATTTTA AAGAAGTAAACATTGGAAGTGCTGCCGTCTTAGCCGATGCCCTAATTGCTGTAACCCATTTTAAGGGCCACGAAGCTACC GGTTTTGGCGGAACCCTGAAAAATATAGGAATGGGTTTGGGAAGCCGTTCGGGAAAACAGCAAATGCACTCCGATCTGCT GCCGGAAGTTAATGCGGAAATCTGTACCGGCTGCCGAAAATGTGCCCGCTGGTGTCCGGCTCAAGCCATTTCGTATGAAA ACGGCAAAGCCGTCATAAACTATGAGCTCTGCATAGGTTGCGGTGAATGTACCGTAACCTGCAATTACCATGCCATAAAA ATTAACTGGAAAGATGAAAATGATGTTATTCAGGAAAAAATTGTTGAATACACCTATGGCGTTTTAAAAGACAAAAAAGG AAAAGCTGCTTTTATTACTTTTTTAACTGACATTTCCCCGGATTGTGATTGCTGCAGTTGGAATGATGTTCCCCTGGTGC CAGATATAGGTATTTTAGCTTCCTTTGATCCCATAGCTATTGACCAAGCAGCCGTGGATTTAGTGAATAATGCTGGATCT ATTGAGAACTCCGTTATAGGTAAATTAGCTCCGGGGGTTGATAAGATTAAAGCTAACAAGCCTTCAATTAACTGGGAGAA ACAGTTGATTTATGGGGAAGCAATAGGTTTAGGCTCCCGAAAATACAAGTTAATTGAAGTTAAATAA
Upstream 100 bases:
>100_bases TTAGGGACTGCCACCTACATATTATCAATACTTGCCGCCGGTTATTTAATTTATTTAATTTTTAAGTCAGGAAAATGGCA TTAAACGAAGGGGGAGATTT
Downstream 100 bases:
>100_bases TAATCTTTTTGACAATTACATCTAACTTAACAATTTCAATACCGGTTTGTCCTTCAAATTCCTTGATAACGTGTGGTATA AATTTTTTAATTTGCTGGGG
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDA NTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEAT GFGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGS IENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK
Sequences:
>Translated_368_residues MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDA NTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEAT GFGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGS IENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK >Mature_367_residues SSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDAN TLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATG FGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIKI NWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGSI ENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK
Specific function: Unknown
COG id: COG2768
COG function: function code R; Uncharacterized Fe-S center protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40061; Mature: 39929
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQF CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECHHH IRRIVNKVKAKKGKPFLTDANTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTG HHHHHHHHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCC KDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATGFGGTLKNIGMGLGSRSGKQ CCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHH QMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK HHHHHCCCCCCHHHHHHHHHHHHHCCHHHEECCCCCEEEEEEEEEECCCEEEEEEEEEEE INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILA EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHC SFDPIAIDQAAVDLVNNAGSIENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSR CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEHEECCCCC KYKLIEVK CEEEEEEC >Mature Secondary Structure SSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQF CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECHHH IRRIVNKVKAKKGKPFLTDANTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTG HHHHHHHHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCC KDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATGFGGTLKNIGMGLGSRSGKQ CCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHH QMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK HHHHHCCCCCCHHHHHHHHHHHHHCCHHHEECCCCCEEEEEEEEEECCCEEEEEEEEEEE INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILA EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHC SFDPIAIDQAAVDLVNNAGSIENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSR CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEHEECCCCC KYKLIEVK CEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA