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The map label for this gene is lsrB [H]

Identifier: 77465502

GI number: 77465502

Start: 579125

End: 580141

Strand: Reverse

Name: lsrB [H]

Synonym: RSP_3500

Alternate gene names: 77465502

Gene position: 580141-579125 (Counterclockwise)

Preceding gene: 77465503

Following gene: 77465501

Centisome position: 61.52

GC content: 66.57

Gene sequence:

>1017_bases
ATGCGTAAGACGGTGAGGCTGCTCGGCACGGTTGCCGCAGGACTGATGGCGGCCAATGTGGCGGCCGCGCAGGAGATCGC
CTTCATCCCGAAGCTGGTCGGGGTGGGCTTCTTCACCTCGGGCGGCAACGGCGCGATGAAGATGGGCGAGGAGCTGGGCG
TCAAGGTGACCTACGACGGCCCGACCGAGCCCAGCGTCTCGGGGCAGGTCCAGTTCGTGAACAACTTCGTCAATCAGGGC
TACGGGGCCATCGTGCTCTCGTCGGTCTCGCCGGACGGGCTCTGCCCCGCGCTGAAGCAGGCCATGGCCCGCGACGTGCT
GGTGATGACCTGGGACAGCGACGTGAACCCCGACTGCCGCTCCTACTACATCAACCAGGGCACGCCCGAGCAGCTCGGCG
GCCTTTTGGTCGACATGGCCAATGACGGGCTCGAGGGCAAGGAAAAGGCCAAGGTGGCCTTCTTCTATTCCTCGCCGACC
GTCACCGACCAGAACGCCTGGGCCGAGGCCGCCAAGGCCAGGATCGCGGCCGACCATCCGGGCTGGGAGATCGTGACCAC
CCAGTATGGCTACAACGACGCGCAGAAGTCGCTGCAGACGGCCGAGAGCATCCTGAGCGCCTATCCCGATCTCGATGCGA
TCATCGCGCCCGACGCGAACGCGCTGCCGGCCTCGGCGCAGGCGGCCGAGAACCTCGGCCGGGCGGGCGAGGTGACGATC
GTGGGCTTCTCGACGCCGAACGTGATGCGCCCCTATGTCAAGCGCGGCACCGTCGAGCGGTTCGGCCTCTGGGACGTGAC
GCAGCAGGGGGCCATCTCGGTCGCTGTGGCCGCGCATGTGCTGAAGGACGGCCCGCTCAATGTGGGCGATAGCCTCGAAG
TGCCGGGCATCGGCTCGGTCGAGGTTTCGCCCAACTCGGTGCAGGGCTACGACTACGAGGCCGAGGGCAACGGCATCATC
CTGCTGCCCGAGCGCACTGTCTTCACCGCCGAGAACATCGACAATTTCGACTTCTGA

Upstream 100 bases:

>100_bases
GCCCTGCGCCACGGCGCCGAGCTGCTGCGGGACTTCATACCGGTGCGGCTGCGGCGGGCCGACTGACCGCGGCCAGACGA
TCAACGGAGGAGGAGAACAG

Downstream 100 bases:

>100_bases
GGCCCAGGGCCTCGGATCGCGGGGGCGCCTCAGGCGCCCCCGCCCCATGACAGGGAGAATGCCATGCAGAGCCGCTGGAA
CGACACCGAGGCGGAGACCT

Product: ABC sugar transporter, periplasmic binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRKTVRLLGTVAAGLMAANVAAAQEIAFIPKLVGVGFFTSGGNGAMKMGEELGVKVTYDGPTEPSVSGQVQFVNNFVNQG
YGAIVLSSVSPDGLCPALKQAMARDVLVMTWDSDVNPDCRSYYINQGTPEQLGGLLVDMANDGLEGKEKAKVAFFYSSPT
VTDQNAWAEAAKARIAADHPGWEIVTTQYGYNDAQKSLQTAESILSAYPDLDAIIAPDANALPASAQAAENLGRAGEVTI
VGFSTPNVMRPYVKRGTVERFGLWDVTQQGAISVAVAAHVLKDGPLNVGDSLEVPGIGSVEVSPNSVQGYDYEAEGNGII
LLPERTVFTAENIDNFDF

Sequences:

>Translated_338_residues
MRKTVRLLGTVAAGLMAANVAAAQEIAFIPKLVGVGFFTSGGNGAMKMGEELGVKVTYDGPTEPSVSGQVQFVNNFVNQG
YGAIVLSSVSPDGLCPALKQAMARDVLVMTWDSDVNPDCRSYYINQGTPEQLGGLLVDMANDGLEGKEKAKVAFFYSSPT
VTDQNAWAEAAKARIAADHPGWEIVTTQYGYNDAQKSLQTAESILSAYPDLDAIIAPDANALPASAQAAENLGRAGEVTI
VGFSTPNVMRPYVKRGTVERFGLWDVTQQGAISVAVAAHVLKDGPLNVGDSLEVPGIGSVEVSPNSVQGYDYEAEGNGII
LLPERTVFTAENIDNFDF
>Mature_338_residues
MRKTVRLLGTVAAGLMAANVAAAQEIAFIPKLVGVGFFTSGGNGAMKMGEELGVKVTYDGPTEPSVSGQVQFVNNFVNQG
YGAIVLSSVSPDGLCPALKQAMARDVLVMTWDSDVNPDCRSYYINQGTPEQLGGLLVDMANDGLEGKEKAKVAFFYSSPT
VTDQNAWAEAAKARIAADHPGWEIVTTQYGYNDAQKSLQTAESILSAYPDLDAIIAPDANALPASAQAAENLGRAGEVTI
VGFSTPNVMRPYVKRGTVERFGLWDVTQQGAISVAVAAHVLKDGPLNVGDSLEVPGIGSVEVSPNSVQGYDYEAEGNGII
LLPERTVFTAENIDNFDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=336, Percent_Identity=72.6190476190476, Blast_Score=486, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35731; Mature: 35731

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTVRLLGTVAAGLMAANVAAAQEIAFIPKLVGVGFFTSGGNGAMKMGEELGVKVTYDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHCCEEEEECC
PTEPSVSGQVQFVNNFVNQGYGAIVLSSVSPDGLCPALKQAMARDVLVMTWDSDVNPDCR
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHH
SYYINQGTPEQLGGLLVDMANDGLEGKEKAKVAFFYSSPTVTDQNAWAEAAKARIAADHP
EEEECCCCHHHHCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHEEECCCC
GWEIVTTQYGYNDAQKSLQTAESILSAYPDLDAIIAPDANALPASAQAAENLGRAGEVTI
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCEEE
VGFSTPNVMRPYVKRGTVERFGLWDVTQQGAISVAVAAHVLKDGPLNVGDSLEVPGIGSV
EEECCCHHHHHHHHCCCCHHCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCEE
EVSPNSVQGYDYEAEGNGIILLPERTVFTAENIDNFDF
EECCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCC
>Mature Secondary Structure
MRKTVRLLGTVAAGLMAANVAAAQEIAFIPKLVGVGFFTSGGNGAMKMGEELGVKVTYDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHCCEEEEECC
PTEPSVSGQVQFVNNFVNQGYGAIVLSSVSPDGLCPALKQAMARDVLVMTWDSDVNPDCR
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHH
SYYINQGTPEQLGGLLVDMANDGLEGKEKAKVAFFYSSPTVTDQNAWAEAAKARIAADHP
EEEECCCCHHHHCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHEEECCCC
GWEIVTTQYGYNDAQKSLQTAESILSAYPDLDAIIAPDANALPASAQAAENLGRAGEVTI
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCEEE
VGFSTPNVMRPYVKRGTVERFGLWDVTQQGAISVAVAAHVLKDGPLNVGDSLEVPGIGSV
EEECCCHHHHHHHHCCCCHHCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCEE
EVSPNSVQGYDYEAEGNGIILLPERTVFTAENIDNFDF
EECCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA