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The map label for this gene is lsrD [H]

Identifier: 77465503

GI number: 77465503

Start: 580176

End: 581159

Strand: Reverse

Name: lsrD [H]

Synonym: RSP_3501

Alternate gene names: 77465503

Gene position: 581159-580176 (Counterclockwise)

Preceding gene: 77465504

Following gene: 77465502

Centisome position: 61.63

GC content: 69.11

Gene sequence:

>984_bases
ATGAACCGCCATCTGATGCGCTGGGAGGTGCTGCTCCTCCTGATCCTGCTGGCCGAGCTTGCCATCTTCGGCATGATCAA
CCCGCGCTTCCTCAGACCCTCGTCGCTTCTCTTCGGCACCTCGGATTTCGTGCAGGTGGGGATCGTGGCGGTGCCGCTGA
CGCTCGTCATCATCGCAGGCGGCATCGACGTGAGCTTCGCCTCGACCGTGGGCCTCGCGGCCATCGCCTTCGGCATCGCC
AACTTCTTCGGCCTTCCGCTGCCCCTGTCGCTGGCCGTGGGTCTGGCCACCGGCGCCGCGGCGGGGCTGCTCAATGCGAC
GATCATCCGGCTCACCCGGCTGCAGCCGCTCGTGGTGACGCTGGGCTCGCTCTACATGTTCTCGGGCGCGGCGACGGTCC
TGTCGGGCGTCGTGGGCGCCAGCGGCTACGAGGGGATCGGCGGCTTTCCCGAGACCTTCACCGCGCTCGGCTATGCCCAA
GTGCTGGGCCTGCCGATGCCGCTCGTCGTCTTCCTCGTCTTCGCGGCGGTACTTCTCGTGCTCCTGCACCTGACCCGGTT
CGGTCGGCTCGTGTTCCAGATCGGCCAGAACGCCGAGGCCGCGCGCCATTCCGGGATGCCCGTCTTCCGCGTGCAGCTCG
TGACCTATGTCCTGACCGGCCTTGCCGCCGCCCTCGCGGGGCTGATGCTCTCGGCCTATTTCGGCTCGGCCCGCGTCGAT
CTCGGCAGCGCCACGCTGCTGCCCGCGATCACCGCGGCCGTCCTTGGCGGTGCCTCGATCTACGGCGGGCAGGGCTCCGT
CCTCGGCACGATCATCGCCACCTTCATCATCGGCTACCTCCAGCAGGGCCTGCAGATGAGCGGCGTGCCGAGCCAGATTT
CCAGCGCGCTGTCCGGGGCGCTGCTGGTCCTCGTCGTCGCCCTGCGCCACGGCGCCGAGCTGCTGCGGGACTTCATACCG
GTGCGGCTGCGGCGGGCCGACTGA

Upstream 100 bases:

>100_bases
ACGGGCGGCTGCGCATCGCGCTCGAGGCCCGAGACCGCGCAGCGCGCTACCGCCGCTCGAGCCACAGGATCTCGCCCGCC
CGCGATCTGGAGGATGCCGC

Downstream 100 bases:

>100_bases
CCGCGGCCAGACGATCAACGGAGGAGGAGAACAGATGCGTAAGACGGTGAGGCTGCTCGGCACGGTTGCCGCAGGACTGA
TGGCGGCCAATGTGGCGGCC

Product: ABC sugar transporter, inner membrane subunit

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNRHLMRWEVLLLLILLAELAIFGMINPRFLRPSSLLFGTSDFVQVGIVAVPLTLVIIAGGIDVSFASTVGLAAIAFGIA
NFFGLPLPLSLAVGLATGAAAGLLNATIIRLTRLQPLVVTLGSLYMFSGAATVLSGVVGASGYEGIGGFPETFTALGYAQ
VLGLPMPLVVFLVFAAVLLVLLHLTRFGRLVFQIGQNAEAARHSGMPVFRVQLVTYVLTGLAAALAGLMLSAYFGSARVD
LGSATLLPAITAAVLGGASIYGGQGSVLGTIIATFIIGYLQQGLQMSGVPSQISSALSGALLVLVVALRHGAELLRDFIP
VRLRRAD

Sequences:

>Translated_327_residues
MNRHLMRWEVLLLLILLAELAIFGMINPRFLRPSSLLFGTSDFVQVGIVAVPLTLVIIAGGIDVSFASTVGLAAIAFGIA
NFFGLPLPLSLAVGLATGAAAGLLNATIIRLTRLQPLVVTLGSLYMFSGAATVLSGVVGASGYEGIGGFPETFTALGYAQ
VLGLPMPLVVFLVFAAVLLVLLHLTRFGRLVFQIGQNAEAARHSGMPVFRVQLVTYVLTGLAAALAGLMLSAYFGSARVD
LGSATLLPAITAAVLGGASIYGGQGSVLGTIIATFIIGYLQQGLQMSGVPSQISSALSGALLVLVVALRHGAELLRDFIP
VRLRRAD
>Mature_327_residues
MNRHLMRWEVLLLLILLAELAIFGMINPRFLRPSSLLFGTSDFVQVGIVAVPLTLVIIAGGIDVSFASTVGLAAIAFGIA
NFFGLPLPLSLAVGLATGAAAGLLNATIIRLTRLQPLVVTLGSLYMFSGAATVLSGVVGASGYEGIGGFPETFTALGYAQ
VLGLPMPLVVFLVFAAVLLVLLHLTRFGRLVFQIGQNAEAARHSGMPVFRVQLVTYVLTGLAAALAGLMLSAYFGSARVD
LGSATLLPAITAAVLGGASIYGGQGSVLGTIIATFIIGYLQQGLQMSGVPSQISSALSGALLVLVVALRHGAELLRDFIP
VRLRRAD

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=321, Percent_Identity=55.1401869158878, Blast_Score=314, Evalue=6e-87,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=32.1311475409836, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790524, Length=308, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=29.0849673202614, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693152, Length=240, Percent_Identity=31.25, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789992, Length=323, Percent_Identity=30.3405572755418, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=281, Percent_Identity=32.7402135231317, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787793, Length=304, Percent_Identity=27.3026315789474, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33915; Mature: 33915

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHLMRWEVLLLLILLAELAIFGMINPRFLRPSSLLFGTSDFVQVGIVAVPLTLVIIAG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC
GIDVSFASTVGLAAIAFGIANFFGLPLPLSLAVGLATGAAAGLLNATIIRLTRLQPLVVT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSLYMFSGAATVLSGVVGASGYEGIGGFPETFTALGYAQVLGLPMPLVVFLVFAAVLLV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLHLTRFGRLVFQIGQNAEAARHSGMPVFRVQLVTYVLTGLAAALAGLMLSAYFGSARVD
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGSATLLPAITAAVLGGASIYGGQGSVLGTIIATFIIGYLQQGLQMSGVPSQISSALSGA
CCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LLVLVVALRHGAELLRDFIPVRLRRAD
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRHLMRWEVLLLLILLAELAIFGMINPRFLRPSSLLFGTSDFVQVGIVAVPLTLVIIAG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC
GIDVSFASTVGLAAIAFGIANFFGLPLPLSLAVGLATGAAAGLLNATIIRLTRLQPLVVT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSLYMFSGAATVLSGVVGASGYEGIGGFPETFTALGYAQVLGLPMPLVVFLVFAAVLLV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLHLTRFGRLVFQIGQNAEAARHSGMPVFRVQLVTYVLTGLAAALAGLMLSAYFGSARVD
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LGSATLLPAITAAVLGGASIYGGQGSVLGTIIATFIIGYLQQGLQMSGVPSQISSALSGA
CCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LLVLVVALRHGAELLRDFIPVRLRRAD
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA