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The map label for this gene is ydhC [H]

Identifier: 77465450

GI number: 77465450

Start: 518535

End: 519203

Strand: Reverse

Name: ydhC [H]

Synonym: RSP_3448

Alternate gene names: 77465450

Gene position: 519203-518535 (Counterclockwise)

Preceding gene: 77465451

Following gene: 77465449

Centisome position: 55.06

GC content: 69.21

Gene sequence:

>669_bases
ATGTTCATGAGTGCCCCCAGACCGCTCGCCCACGAGGCCTATCAGCGCATCATCTCGATGATCTTCGAAGGCGCGCTGAA
ATCGGGCGACCTGTTGCAGGAGGCCGCCCTGGGCGAGGTCTTCGGCATGTCGCGCACCCCCGTGCGCGAGGCGATCAAGC
GGCTGGAGAGCGAGGGCCTCGCCGTCGTCGAGGGCCGCTTCACCTGCGTGCGCAGCGTGACGGCCGCCGATGTCGAGGAG
GTCTTCTTCCTCCGGCTGGAGCTCGAGCCGCTCGCGGCACGCTCGGCGGTGCGGCTGCCGCCGGCTCAGGTCGATGCGAT
GGAGGAGCGCGTGCGCCTCCTGATGGCGTCGGACCCTGCGGTCAACGATCTCCAGCGCCAGACCGACTACGAGTTCCACC
ACCTGCTCGGGCGCGAGTTCGGCAATCAGGCCGTGGCCCAGACGGTGGCCACGCTGCATCGGCGCACCTGCATCTTCGAC
CACACTCAGGTGCCCGAACGGTTCCTGCGCGGCTGCGAGGAACATCTGGAGATCCTCGAAGCCGTGCGCAGCGGCAATGC
CGACGCGGTCGAGGCTGGGCTGCGGGCCCATCTCGAACATGCGCGCGACGCCGTGCTCCTCCGTCTGCGCCGCGCTGCCG
CGGCGACCGCTTCCGCGAGTGCCTCATGA

Upstream 100 bases:

>100_bases
GCGTCCTGCGGTCGGATTACCTCTTGTCCTGCGATCTCGTCGGCGGCTTCTACGAGCCGGGCGAGATTGTGCGTCCCGTC
ACGATTCGGGGCCCGGAGGA

Downstream 100 bases:

>100_bases
ACTGTCTGATCGTCCAACCCATCCACGAAGCGGGTCTCGCCGCCCTGCGCGCGGCCGGGATCGCGCCCATCCTCTGCCCG
GCGCCCGACATGGCGACGGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFMSAPRPLAHEAYQRIISMIFEGALKSGDLLQEAALGEVFGMSRTPVREAIKRLESEGLAVVEGRFTCVRSVTAADVEE
VFFLRLELEPLAARSAVRLPPAQVDAMEERVRLLMASDPAVNDLQRQTDYEFHHLLGREFGNQAVAQTVATLHRRTCIFD
HTQVPERFLRGCEEHLEILEAVRSGNADAVEAGLRAHLEHARDAVLLRLRRAAAATASASAS

Sequences:

>Translated_222_residues
MFMSAPRPLAHEAYQRIISMIFEGALKSGDLLQEAALGEVFGMSRTPVREAIKRLESEGLAVVEGRFTCVRSVTAADVEE
VFFLRLELEPLAARSAVRLPPAQVDAMEERVRLLMASDPAVNDLQRQTDYEFHHLLGREFGNQAVAQTVATLHRRTCIFD
HTQVPERFLRGCEEHLEILEAVRSGNADAVEAGLRAHLEHARDAVLLRLRRAAAATASASAS
>Mature_222_residues
MFMSAPRPLAHEAYQRIISMIFEGALKSGDLLQEAALGEVFGMSRTPVREAIKRLESEGLAVVEGRFTCVRSVTAADVEE
VFFLRLELEPLAARSAVRLPPAQVDAMEERVRLLMASDPAVNDLQRQTDYEFHHLLGREFGNQAVAQTVATLHRRTCIFD
HTQVPERFLRGCEEHLEILEAVRSGNADAVEAGLRAHLEHARDAVLLRLRRAAAATASASAS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=27.8301886792453, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24569; Mature: 24569

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMSAPRPLAHEAYQRIISMIFEGALKSGDLLQEAALGEVFGMSRTPVREAIKRLESEGL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AVVEGRFTCVRSVTAADVEEVFFLRLELEPLAARSAVRLPPAQVDAMEERVRLLMASDPA
EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
VNDLQRQTDYEFHHLLGREFGNQAVAQTVATLHRRTCIFDHTQVPERFLRGCEEHLEILE
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVRSGNADAVEAGLRAHLEHARDAVLLRLRRAAAATASASAS
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFMSAPRPLAHEAYQRIISMIFEGALKSGDLLQEAALGEVFGMSRTPVREAIKRLESEGL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AVVEGRFTCVRSVTAADVEEVFFLRLELEPLAARSAVRLPPAQVDAMEERVRLLMASDPA
EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
VNDLQRQTDYEFHHLLGREFGNQAVAQTVATLHRRTCIFDHTQVPERFLRGCEEHLEILE
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVRSGNADAVEAGLRAHLEHARDAVLLRLRRAAAATASASAS
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]