Click here to switch to the map view.

The map label for this gene is ybgK [H]

Identifier: 77465451

GI number: 77465451

Start: 519194

End: 520258

Strand: Reverse

Name: ybgK [H]

Synonym: RSP_3449

Alternate gene names: 77465451

Gene position: 520258-519194 (Counterclockwise)

Preceding gene: 77465452

Following gene: 77465450

Centisome position: 55.17

GC content: 73.71

Gene sequence:

>1065_bases
ATGAGCCTCGAGATCCTGACCGCAGGTCCCATGCTGACCGTGCAGGACGCGGGCCGCTTCGGCCTGCGCCACATGGGCGT
CTCGCCCGCGGGCCCCATCGACCGGGCCGCCATGGCGCTCGCCAATGCGCTCGTGGGCAATGCGCCCGGCGCCGCGGCGC
TGGAATTCGCAGGCCCTGCGGGCAGCTTCCGCTGCGACCGGCCGGTGCGCTTTGCGGTGGCCGGGGCCGACTGCCCGATC
CGCATCGACAAGCGCGTGGTGCTGGCGGGCGAGAGCCACCGGCTGAACCCCGGTGAAACCCTCACCGTGGGCGTGCCCGA
AGGCACGGTCTGGGCCTATCTGGCCTTCTCCGGCGCCATCGCCACGCCCGAGGTGCTGGGCTCGCGCGCGACGCATCTCC
GCTCGGGCCTCGGCGGCCCCGAGGGGCGGGCGCTGGCGGCGGGCGACCGGCTGCCGCTCGGCCCCGACGAGGCCGACGCG
CCCTGCCTGCGCCCCGACAGCCGTCTGGACGGCGCGGCGCCCTTCCGCGAGACGGGACCGATCCGGCTGATCCTCGGCCC
GCAGGACGGCCATTTCGCCCCCGAGATCGTGGCGCGCCTCACCGGGTGCGACTTCACCGTGACCCCGCAGCGCGACCGGA
TGGCCATGGTGCTGGGCGGCACCGACCTGCCCGCCGCGCGCGGGCACGACATCGTCTCCGACGGCACGGTGCCGGGCTCG
GTGCAGGTGCCGGGCTCGGGGATGCCGCTCGTGCTTCTGGCCGAGAGCCAGACCACCGGCGGCTATCCCAAGATCGGGAC
CGTGGCCTCGGTCGATCTCGCGCGGCTCGCGCAGATGCCGGTGGGCGCGCAGGTCCGCTTCGCGCCGATCTCGGCCGAGG
AGGGCGAGGATCTCTGGATCGCGCGGCAGGTGCGGCTAAGGCGGCTTCTCGAGGCGCTGGTGGCCAAGCCCGAGGGCGTC
CTGCGGTCGGATTACCTCTTGTCCTGCGATCTCGTCGGCGGCTTCTACGAGCCGGGCGAGATTGTGCGTCCCGTCACGAT
TCGGGGCCCGGAGGAATGTTCATGA

Upstream 100 bases:

>100_bases
ACCATATCCGCTTCCATCCTGTCGGACCCGAGGAGGCGCGCGCGCTCGAGGCGCGCAGTGCCGCAGGCGAGATGATCGTG
ACCCCCGAAGAGATCCGCGC

Downstream 100 bases:

>100_bases
GTGCCCCCAGACCGCTCGCCCACGAGGCCTATCAGCGCATCATCTCGATGATCTTCGAAGGCGCGCTGAAATCGGGCGAC
CTGTTGCAGGAGGCCGCCCT

Product: putative allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MSLEILTAGPMLTVQDAGRFGLRHMGVSPAGPIDRAAMALANALVGNAPGAAALEFAGPAGSFRCDRPVRFAVAGADCPI
RIDKRVVLAGESHRLNPGETLTVGVPEGTVWAYLAFSGAIATPEVLGSRATHLRSGLGGPEGRALAAGDRLPLGPDEADA
PCLRPDSRLDGAAPFRETGPIRLILGPQDGHFAPEIVARLTGCDFTVTPQRDRMAMVLGGTDLPAARGHDIVSDGTVPGS
VQVPGSGMPLVLLAESQTTGGYPKIGTVASVDLARLAQMPVGAQVRFAPISAEEGEDLWIARQVRLRRLLEALVAKPEGV
LRSDYLLSCDLVGGFYEPGEIVRPVTIRGPEECS

Sequences:

>Translated_354_residues
MSLEILTAGPMLTVQDAGRFGLRHMGVSPAGPIDRAAMALANALVGNAPGAAALEFAGPAGSFRCDRPVRFAVAGADCPI
RIDKRVVLAGESHRLNPGETLTVGVPEGTVWAYLAFSGAIATPEVLGSRATHLRSGLGGPEGRALAAGDRLPLGPDEADA
PCLRPDSRLDGAAPFRETGPIRLILGPQDGHFAPEIVARLTGCDFTVTPQRDRMAMVLGGTDLPAARGHDIVSDGTVPGS
VQVPGSGMPLVLLAESQTTGGYPKIGTVASVDLARLAQMPVGAQVRFAPISAEEGEDLWIARQVRLRRLLEALVAKPEGV
LRSDYLLSCDLVGGFYEPGEIVRPVTIRGPEECS
>Mature_353_residues
SLEILTAGPMLTVQDAGRFGLRHMGVSPAGPIDRAAMALANALVGNAPGAAALEFAGPAGSFRCDRPVRFAVAGADCPIR
IDKRVVLAGESHRLNPGETLTVGVPEGTVWAYLAFSGAIATPEVLGSRATHLRSGLGGPEGRALAAGDRLPLGPDEADAP
CLRPDSRLDGAAPFRETGPIRLILGPQDGHFAPEIVARLTGCDFTVTPQRDRMAMVLGGTDLPAARGHDIVSDGTVPGSV
QVPGSGMPLVLLAESQTTGGYPKIGTVASVDLARLAQMPVGAQVRFAPISAEEGEDLWIARQVRLRRLLEALVAKPEGVL
RSDYLLSCDLVGGFYEPGEIVRPVTIRGPEECS

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=292, Percent_Identity=36.6438356164384, Blast_Score=179, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6319685, Length=329, Percent_Identity=26.7477203647416, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 36869; Mature: 36738

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEILTAGPMLTVQDAGRFGLRHMGVSPAGPIDRAAMALANALVGNAPGAAALEFAGPA
CCEEEEECCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
GSFRCDRPVRFAVAGADCPIRIDKRVVLAGESHRLNPGETLTVGVPEGTVWAYLAFSGAI
CCCCCCCCEEEEEECCCCCEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCC
ATPEVLGSRATHLRSGLGGPEGRALAAGDRLPLGPDEADAPCLRPDSRLDGAAPFRETGP
CCHHHHCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IRLILGPQDGHFAPEIVARLTGCDFTVTPQRDRMAMVLGGTDLPAARGHDIVSDGTVPGS
EEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE
VQVPGSGMPLVLLAESQTTGGYPKIGTVASVDLARLAQMPVGAQVRFAPISAEEGEDLWI
EEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEH
ARQVRLRRLLEALVAKPEGVLRSDYLLSCDLVGGFYEPGEIVRPVTIRGPEECS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEECEEEECCCCCCC
>Mature Secondary Structure 
SLEILTAGPMLTVQDAGRFGLRHMGVSPAGPIDRAAMALANALVGNAPGAAALEFAGPA
CEEEEECCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
GSFRCDRPVRFAVAGADCPIRIDKRVVLAGESHRLNPGETLTVGVPEGTVWAYLAFSGAI
CCCCCCCCEEEEEECCCCCEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCC
ATPEVLGSRATHLRSGLGGPEGRALAAGDRLPLGPDEADAPCLRPDSRLDGAAPFRETGP
CCHHHHCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IRLILGPQDGHFAPEIVARLTGCDFTVTPQRDRMAMVLGGTDLPAARGHDIVSDGTVPGS
EEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE
VQVPGSGMPLVLLAESQTTGGYPKIGTVASVDLARLAQMPVGAQVRFAPISAEEGEDLWI
EEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEH
ARQVRLRRLLEALVAKPEGVLRSDYLLSCDLVGGFYEPGEIVRPVTIRGPEECS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEECEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]