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The map label for this gene is ydfH [C]

Identifier: 77465447

GI number: 77465447

Start: 515634

End: 516269

Strand: Reverse

Name: ydfH [C]

Synonym: RSP_3445

Alternate gene names: 77465447

Gene position: 516269-515634 (Counterclockwise)

Preceding gene: 77465448

Following gene: 77465446

Centisome position: 54.75

GC content: 69.97

Gene sequence:

>636_bases
ATGAGTTCCGAGACGCTCTCGCACAGCGCCTACCGCCGCCTCCGCGAGGATATTCTCGAGGGGCGGATCGCGCCCAACAC
CATCCTGACCGAGCGCGAGCTGGCCGAGCGGCTGGGCATCTCGCGCACGCCGCTGCGCTCGGCTTTGTCGGTGCTCGAGC
GCGAGCAGGTGATCGAGCGGATGGTGAACGGCACGCTGCTGGTGCGTCTCGTCTCGGTCGAGCAGCTGCTCGACATCATC
CAGCTCCGGCTGATCCTCGAACGCGCCGCTGCGCGCAGGGCTGCGGGCTTCGGCCTCACGCCCGAGCTCGAGGCCGCGCG
CGAGGCGCAGCTGCGCTATCTCGGCGCGGGGGCGATGGATTTCGAGAGCTTCTGGCAGGATGACGGCATCTTCCACCGGG
CGGTGGCGCTGGCGGCGGGGCTCACGCTCCTGCCGGGGCTTCTCGCCGAGCAGCGCGCCATCGTGCGGCGCAGCACCATC
ATCCGCACCCACACCAACTTTGCCGATCAGGCGCGGGAACATATCGCGGTGATCGACGCGATCGCCGGCCGCGACGCCGA
GGCCGCCGCGGCCGCCATGGCGCTTCATTTCGACCGCATGCGCGCCCGCACGCTGGGCTGGCTCAACAAGGACTAA

Upstream 100 bases:

>100_bases
ACTGGAACGGCAGCCACTGCCCCGACGAGGGGATGGATCCGGCCGACCTCGCCCGCGCGGTAGAAGCCGTCTTCGCCGCG
CTGTCGGGGAACGGCTCCCC

Downstream 100 bases:

>100_bases
TCCGATGTCGACACTCCCGGCAGACACCGCGGCCGACCCGCTCCGCGGCCGTGATGCGGTTTTCCCGGCCGCCGAATTCG
AAGGCCGCATCGCGCGGCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: GntR Family Transcriptional Regulator; Transcriptional Regulator Protein

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSSETLSHSAYRRLREDILEGRIAPNTILTERELAERLGISRTPLRSALSVLEREQVIERMVNGTLLVRLVSVEQLLDII
QLRLILERAAARRAAGFGLTPELEAAREAQLRYLGAGAMDFESFWQDDGIFHRAVALAAGLTLLPGLLAEQRAIVRRSTI
IRTHTNFADQAREHIAVIDAIAGRDAEAAAAAMALHFDRMRARTLGWLNKD

Sequences:

>Translated_211_residues
MSSETLSHSAYRRLREDILEGRIAPNTILTERELAERLGISRTPLRSALSVLEREQVIERMVNGTLLVRLVSVEQLLDII
QLRLILERAAARRAAGFGLTPELEAAREAQLRYLGAGAMDFESFWQDDGIFHRAVALAAGLTLLPGLLAEQRAIVRRSTI
IRTHTNFADQAREHIAVIDAIAGRDAEAAAAAMALHFDRMRARTLGWLNKD
>Mature_210_residues
SSETLSHSAYRRLREDILEGRIAPNTILTERELAERLGISRTPLRSALSVLEREQVIERMVNGTLLVRLVSVEQLLDIIQ
LRLILERAAARRAAGFGLTPELEAAREAQLRYLGAGAMDFESFWQDDGIFHRAVALAAGLTLLPGLLAEQRAIVRRSTII
RTHTNFADQAREHIAVIDAIAGRDAEAAAAAMALHFDRMRARTLGWLNKD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=221, Percent_Identity=25.7918552036199, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23501; Mature: 23370

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSETLSHSAYRRLREDILEGRIAPNTILTERELAERLGISRTPLRSALSVLEREQVIER
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MVNGTLLVRLVSVEQLLDIIQLRLILERAAARRAAGFGLTPELEAAREAQLRYLGAGAMD
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
FESFWQDDGIFHRAVALAAGLTLLPGLLAEQRAIVRRSTIIRTHTNFADQAREHIAVIDA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IAGRDAEAAAAAMALHFDRMRARTLGWLNKD
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSETLSHSAYRRLREDILEGRIAPNTILTERELAERLGISRTPLRSALSVLEREQVIER
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MVNGTLLVRLVSVEQLLDIIQLRLILERAAARRAAGFGLTPELEAAREAQLRYLGAGAMD
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
FESFWQDDGIFHRAVALAAGLTLLPGLLAEQRAIVRRSTIIRTHTNFADQAREHIAVIDA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IAGRDAEAAAAAMALHFDRMRARTLGWLNKD
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA