Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 77465446

GI number: 77465446

Start: 514445

End: 515629

Strand: Reverse

Name: ypdF [C]

Synonym: RSP_3444

Alternate gene names: 77465446

Gene position: 515629-514445 (Counterclockwise)

Preceding gene: 77465447

Following gene: 77465445

Centisome position: 54.68

GC content: 73.16

Gene sequence:

>1185_bases
ATGTCGACACTCCCGGCAGACACCGCGGCCGACCCGCTCCGCGGCCGTGATGCGGTTTTCCCGGCCGCCGAATTCGAAGG
CCGCATCGCGCGGCTGCAGGCGGCCACGGCGGATCTCGGCGCCGATGCGCTGGTGCTGCTCGGACCGGAGAACATCTTCT
GGGCCACGGGGCGGCAGACGGCGGGCTATTTCGCCTTTCAGGCCCTCGTGGTGCCGGTCGAGGGGGCACCCGTGCTCCTC
GTGCGCCAGCTCGAGACGACGGGCGCGCGGGCCTCGACCTGGCTCGCCGACATCCGCGCCTGGCAGGACGGCGAGGACCC
GGCCGCGGCGCTCGGCAGCCTTGTGCGGGATCTGGGCCTCGGGCGCATCGCCATGGAGCGCGGCGCCTGGTTCATCGGTC
AGGACCTGTCCGAGCGCATCGCCCAGGCCCTTGCCGGCGTGGCGCTGATCGACGGGTCGGGTGTGGCGGAGCGGCTGCGC
GCGGTGAAATCGCCGGCCGAGCAGTCCGCGATCCGCAAGGCCGCGGGCTATGCCGAGGCCGCCATTGCCGCTTCGATCGA
GGCCTGCCGCGCGGGCGTCAGCGAGAACGAGGTGGCCGCCGCCATGATGGGGGCCGCGATCCGCGCGGGCTCCGAAGCCA
TGGCGATGGAGCCGCTCGTCTCCTCGGGGCCGCGCTCGGGCGTGCCCCATGCGACCTGGCGGCGGCGGCTGCTCGAACCC
GGCGACGGGGTCTTCCTCGAACTCGCCGCGAGTCACGACCGCTATCACGCGGCGCTCATGCGCAGCGTCTGGATCGGCCC
GCCGCCCGCCGAGGCCGCGCGCATGATGGACACGGCCGAGCGCGCGCTCGATGCGGCGCTGGCGGCCCTGCGCCCCGGCG
CGCCCTGCGCGGCGCCGCACGAGGCCGCGCAGGCGGTGATCGATGCCGCGGGCTATACGGCCGCCTTCCGCAAACGCATC
GGCTATTCGATGGGCGCGGCCTTCGCGCCCGACTGGGGCGAGGGGGCGATCCTGTCGCTCTTCACCGGCGTGGATCGCCT
GCTGGAGCCAGGCATGGTTTTCCACCTGCCCGCGACGCTGCGCAGCTACGGCGACTATACGGTCGGCGCTTCCGAGACGG
TGATCCTCACCGAAACCGGCATCGAGGTCTTGTCGACCCTGCCCAGACAGATGAGGGTGCGCTGA

Upstream 100 bases:

>100_bases
ATCGCCGGCCGCGACGCCGAGGCCGCCGCGGCCGCCATGGCGCTTCATTTCGACCGCATGCGCGCCCGCACGCTGGGCTG
GCTCAACAAGGACTAATCCG

Downstream 100 bases:

>100_bases
CCCTTCCGCCGATGGAGCGCCCTCTGGACCACCACCTTCCCGCCTCGCCCGCGACCGTCTCGTGGGGCCATCTCGATCCC
GCCGCCGCCCCCGTGCTGCA

Product: putative Xaa-Pro aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSTLPADTAADPLRGRDAVFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQTAGYFAFQALVVPVEGAPVLL
VRQLETTGARASTWLADIRAWQDGEDPAAALGSLVRDLGLGRIAMERGAWFIGQDLSERIAQALAGVALIDGSGVAERLR
AVKSPAEQSAIRKAAGYAEAAIAASIEACRAGVSENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEP
GDGVFLELAASHDRYHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPHEAAQAVIDAAGYTAAFRKRI
GYSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATLRSYGDYTVGASETVILTETGIEVLSTLPRQMRVR

Sequences:

>Translated_394_residues
MSTLPADTAADPLRGRDAVFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQTAGYFAFQALVVPVEGAPVLL
VRQLETTGARASTWLADIRAWQDGEDPAAALGSLVRDLGLGRIAMERGAWFIGQDLSERIAQALAGVALIDGSGVAERLR
AVKSPAEQSAIRKAAGYAEAAIAASIEACRAGVSENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEP
GDGVFLELAASHDRYHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPHEAAQAVIDAAGYTAAFRKRI
GYSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATLRSYGDYTVGASETVILTETGIEVLSTLPRQMRVR
>Mature_393_residues
STLPADTAADPLRGRDAVFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQTAGYFAFQALVVPVEGAPVLLV
RQLETTGARASTWLADIRAWQDGEDPAAALGSLVRDLGLGRIAMERGAWFIGQDLSERIAQALAGVALIDGSGVAERLRA
VKSPAEQSAIRKAAGYAEAAIAASIEACRAGVSENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEPG
DGVFLELAASHDRYHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPHEAAQAVIDAAGYTAAFRKRIG
YSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATLRSYGDYTVGASETVILTETGIEVLSTLPRQMRVR

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=243, Percent_Identity=28.3950617283951, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41311; Mature: 41179

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLPADTAADPLRGRDAVFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQT
CCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCC
AGYFAFQALVVPVEGAPVLLVRQLETTGARASTWLADIRAWQDGEDPAAALGSLVRDLGL
CHHEEEEEEEEECCCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
GRIAMERGAWFIGQDLSERIAQALAGVALIDGSGVAERLRAVKSPAEQSAIRKAAGYAEA
CHHHHHCCCEEECHHHHHHHHHHHHCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
AIAASIEACRAGVSENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
GDGVFLELAASHDRYHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPH
CCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
EAAQAVIDAAGYTAAFRKRIGYSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATL
HHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHH
RSYGDYTVGASETVILTETGIEVLSTLPRQMRVR
HHCCCEEECCCCEEEEECCCHHHHHHCHHHHCCC
>Mature Secondary Structure 
STLPADTAADPLRGRDAVFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQT
CCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCC
AGYFAFQALVVPVEGAPVLLVRQLETTGARASTWLADIRAWQDGEDPAAALGSLVRDLGL
CHHEEEEEEEEECCCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
GRIAMERGAWFIGQDLSERIAQALAGVALIDGSGVAERLRAVKSPAEQSAIRKAAGYAEA
CHHHHHCCCEEECHHHHHHHHHHHHCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
AIAASIEACRAGVSENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
GDGVFLELAASHDRYHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPH
CCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
EAAQAVIDAAGYTAAFRKRIGYSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATL
HHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHH
RSYGDYTVGASETVILTETGIEVLSTLPRQMRVR
HHCCCEEECCCCEEEEECCCHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]