Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 77461760

GI number: 77461760

Start: 6208379

End: 6209053

Strand: Reverse

Name: radC [C]

Synonym: Pfl01_5539

Alternate gene names: 77461760

Gene position: 6209053-6208379 (Counterclockwise)

Preceding gene: 77461765

Following gene: 77461758

Centisome position: 96.44

GC content: 56.15

Gene sequence:

>675_bases
ATGAGTATTCGCGATTGGCCGGCGGCGGAAAGGCCGCGGGAAAGGTTGTTGGAACAGGGCTCTGCGAGCCTTTCGGATGC
GGAACTGCTGGCGATTTTTCTGCGAACCGGCGTGCCGGGGAAAAGTGCAGTTGATCTGGCGCGGCACTTGTTGAATCAGT
TTGGCAGCTTGAGATTGTTGCTTGAGGCCGATCAGGAAGCATTCAGCAAGCAATTGGGTCTCGGCCCTGCAAAGTTCGCC
CAGCTGCAAGCTGCTCAAGAAATGAGCAAGCGACATCTGGCCGAGCGTTCACGGCAAAAAACAGCGCTTGAAAACCCACA
AGTGGTTCGTGATTACCTCAAAGTCATGCTGCGCCACGAGCCGCACGAGGTATTTGGTTGCTTGTTTCTGGATTCCAAGC
ATCAAGTGCTCACCTTCGAGGCTCTGTTTCGCGGCTCGATCGACAACACCGCCGTGCATCCCCGGGAAGTCGTGAAGCGT
TCCCTGGCCAACAACGCGGCAGCGGTGATCCTGTGTCATAACCATCCGTCGGGAAACAGCGATCCGAGTCAGGCTGATCG
ATTATTGACCAAGCGCTTGCAGAAGGCTTTGGAGCTGATCGATGTGCGGGTGCTCGACCACTTCATCGTTGGCGATGGGG
AACCGTTATCGATGGCGGAGTGTGGCTGGATGTAG

Upstream 100 bases:

>100_bases
CGAAACCCCCTCCCCAGAGTGAATTCGCCCGCAAAAAAGATGGGCTACGATATCACAGCGACCGCTACGGAACAGCGGCG
CCCACAGACAAGGAATGTGT

Downstream 100 bases:

>100_bases
CTTGCAGCGACTGTAGTCGCTGCAAGCCGGGGCGGATTACTTGAGGGTGACCTTGGAGTAGTCCTGCCGCCCGAACGGGC
TCACCGAGTAACCCTGCACG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLLLEADQEAFSKQLGLGPAKFA
QLQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHEPHEVFGCLFLDSKHQVLTFEALFRGSIDNTAVHPREVVKR
SLANNAAAVILCHNHPSGNSDPSQADRLLTKRLQKALELIDVRVLDHFIVGDGEPLSMAECGWM

Sequences:

>Translated_224_residues
MSIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLLLEADQEAFSKQLGLGPAKFA
QLQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHEPHEVFGCLFLDSKHQVLTFEALFRGSIDNTAVHPREVVKR
SLANNAAAVILCHNHPSGNSDPSQADRLLTKRLQKALELIDVRVLDHFIVGDGEPLSMAECGWM
>Mature_223_residues
SIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLLLEADQEAFSKQLGLGPAKFAQ
LQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHEPHEVFGCLFLDSKHQVLTFEALFRGSIDNTAVHPREVVKRS
LANNAAAVILCHNHPSGNSDPSQADRLLTKRLQKALELIDVRVLDHFIVGDGEPLSMAECGWM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=46.0093896713615, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1788997, Length=134, Percent_Identity=50.7462686567164, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI2367100, Length=160, Percent_Identity=45, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788312, Length=151, Percent_Identity=43.7086092715232, Blast_Score=127, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y5539_PSEPF (Q3K4M8)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_351267.1
- ProteinModelPortal:   Q3K4M8
- SMR:   Q3K4M8
- STRING:   Q3K4M8
- GeneID:   3713629
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_5539
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   PFLU205922:PFL_5539-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25016; Mature: 24885

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLL
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEH
LEADQEAFSKQLGLGPAKFAQLQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PHEVFGCLFLDSKHQVLTFEALFRGSIDNTAVHPREVVKRSLANNAAAVILCHNHPSGNS
HHHHHEEHEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC
DPSQADRLLTKRLQKALELIDVRVLDHFIVGDGEPLSMAECGWM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC
>Mature Secondary Structure 
SIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHLLNQFGSLRLL
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEH
LEADQEAFSKQLGLGPAKFAQLQAAQEMSKRHLAERSRQKTALENPQVVRDYLKVMLRHE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PHEVFGCLFLDSKHQVLTFEALFRGSIDNTAVHPREVVKRSLANNAAAVILCHNHPSGNS
HHHHHEEHEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC
DPSQADRLLTKRLQKALELIDVRVLDHFIVGDGEPLSMAECGWM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA