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The map label for this gene is yoaB [C]

Identifier: 77461746

GI number: 77461746

Start: 6194796

End: 6195116

Strand: Reverse

Name: yoaB [C]

Synonym: Pfl01_5525

Alternate gene names: 77461746

Gene position: 6195116-6194796 (Counterclockwise)

Preceding gene: 77461747

Following gene: 77461745

Centisome position: 96.22

GC content: 61.37

Gene sequence:

>321_bases
ATGAGTCAGATCGTCAGCCACAACGGTACGGTGTACCTGTCCGGGCAGGTCGGCGATGACTTCAACGCCGGTGTCGAACA
GCAGACCCGTGACGTACTCGCCAACATCGAGCGCCTGCTCGATCTGGCCGGCACCGACAAACAGCACCTGCTGTCGGCGA
CGATCTACCTGAACGACATCGAGGCGCACTTTGCCGGCATGAATTCAGTGTGGGACCAGTGGCTGCCCAAAGGCGCCGCT
CCGGCCCGTGCTACGGTTGAAGCGAAGATGGCCAAGCCGAGCATTCTGGTCGAGATCTCCATCGTCGCCGCGTTGCCGTA
A

Upstream 100 bases:

>100_bases
CCACAGATCAGCGCCGAAGGCCTCGATATTTCCCGTTATGGCAACACCACCCAGGAGTCCGCAAAGCATGGCAATCCAGC
GCCAGCTCACCAATGAGCGC

Downstream 100 bases:

>100_bases
CCCGTTGTAAAGATCCCTCTCCCGGTGCTGTTGGCGGTTCACGCCGCCAGCCAGCGCCGGTTTTTATTCCCATGACCGCC
AAGAAGTCTGCTGCCATGCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSQIVSHNGTVYLSGQVGDDFNAGVEQQTRDVLANIERLLDLAGTDKQHLLSATIYLNDIEAHFAGMNSVWDQWLPKGAA
PARATVEAKMAKPSILVEISIVAALP

Sequences:

>Translated_106_residues
MSQIVSHNGTVYLSGQVGDDFNAGVEQQTRDVLANIERLLDLAGTDKQHLLSATIYLNDIEAHFAGMNSVWDQWLPKGAA
PARATVEAKMAKPSILVEISIVAALP
>Mature_105_residues
SQIVSHNGTVYLSGQVGDDFNAGVEQQTRDVLANIERLLDLAGTDKQHLLSATIYLNDIEAHFAGMNSVWDQWLPKGAAP
ARATVEAKMAKPSILVEISIVAALP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=104, Percent_Identity=43.2692307692308, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 11415; Mature: 11284

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIVSHNGTVYLSGQVGDDFNAGVEQQTRDVLANIERLLDLAGTDKQHLLSATIYLNDI
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECH
EAHFAGMNSVWDQWLPKGAAPARATVEAKMAKPSILVEISIVAALP
HHHHCCHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEEEEEECC
>Mature Secondary Structure 
SQIVSHNGTVYLSGQVGDDFNAGVEQQTRDVLANIERLLDLAGTDKQHLLSATIYLNDI
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECH
EAHFAGMNSVWDQWLPKGAAPARATVEAKMAKPSILVEISIVAALP
HHHHCCHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA