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The map label for this gene is exbD [H]

Identifier: 77459961

GI number: 77459961

Start: 4225025

End: 4225426

Strand: Direct

Name: exbD [H]

Synonym: Pfl01_3739

Alternate gene names: 77459961

Gene position: 4225025-4225426 (Clockwise)

Preceding gene: 77459960

Following gene: 77459962

Centisome position: 65.62

GC content: 60.2

Gene sequence:

>402_bases
ATGTCCTTTTCCACTCAAGACAGCGATGAAGTGCTCAGCGAAATGAACGTCACGCCGCTGGTGGACGTGATGCTCGTGCT
GCTGGTGGTGTTCATCGTCACCGCACCGCTGATGACCAACGCGATCAAGGTCAACCTGCCAAAAACCGACGCCGTCGCCC
CCGCCGAAAAGAAGGATCCGGTGGTGGTCAGCGTCGATCAGGACGGCAAGTTCTTCCTGGCCAAGACCGAGCTGGCGCCG
GAATCACTGGAGGCCAGCCTCAAGGAAGTCAAGGCCAAAGATGCTGACGTGCGCGTGCAGCTGCAGGCCGACTCCGCCGT
GAATTACGGCCAGGTCGCCAAAGCCATGGCGTCCATCGAGCGCTCGGGCATCACCAAGATATCGGTGATGACCACCCGCT
GA

Upstream 100 bases:

>100_bases
ACTTCGCCCACGACTTCGACGCCCTTGCCTCGCGCAGTGCGTTTTCCATCAGCCGCCAGGCCATCGCCAAATCCGCGGCC
GCCGTGCGGGAGGCCAGCTG

Downstream 100 bases:

>100_bases
CGGCGGTGCCGGGCGCGCAGTGAGGGACGCGCCCGGCACCGCTCGTTGAATCCCGTCGCAATCGGCCGACCGAAAAAACG
CAGCGCGTCTTCGGAGGGGA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTAPLMTNAIKVNLPKTDAVAPAEKKDPVVVSVDQDGKFFLAKTELAP
ESLEASLKEVKAKDADVRVQLQADSAVNYGQVAKAMASIERSGITKISVMTTR

Sequences:

>Translated_133_residues
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTAPLMTNAIKVNLPKTDAVAPAEKKDPVVVSVDQDGKFFLAKTELAP
ESLEASLKEVKAKDADVRVQLQADSAVNYGQVAKAMASIERSGITKISVMTTR
>Mature_132_residues
SFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTAPLMTNAIKVNLPKTDAVAPAEKKDPVVVSVDQDGKFFLAKTELAPE
SLEASLKEVKAKDADVRVQLQADSAVNYGQVAKAMASIERSGITKISVMTTR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=123, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14311; Mature: 14180

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTAPLMTNAIKVNLPKTDAVAPAEKKDP
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
VVVSVDQDGKFFLAKTELAPESLEASLKEVKAKDADVRVQLQADSAVNYGQVAKAMASIE
EEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RSGITKISVMTTR
HCCCEEEEEEECC
>Mature Secondary Structure 
SFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTAPLMTNAIKVNLPKTDAVAPAEKKDP
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
VVVSVDQDGKFFLAKTELAPESLEASLKEVKAKDADVRVQLQADSAVNYGQVAKAMASIE
EEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RSGITKISVMTTR
HCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10689178; 10984043 [H]