Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
---|---|
Accession | NC_007492 |
Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77459894
Identifier: 77459894
GI number: 77459894
Start: 4155824
End: 4156360
Strand: Reverse
Name: 77459894
Synonym: Pfl01_3672
Alternate gene names: NA
Gene position: 4156360-4155824 (Counterclockwise)
Preceding gene: 77459895
Following gene: 77459893
Centisome position: 64.56
GC content: 65.36
Gene sequence:
>537_bases ATGCGTACGATTGCATCAAGGATAGGTTTGTCGTTGCTCGGCCTGACGCTCGCTTCCAGCGTCAATGCCGCCACCACGGT CACCGGCCAGATCACTTCCAGCCTGATCCTGATCAGCAGTTGCCAGGTCAACGGTTCCGGCGGTTCGACCGGGCTGAACT TCGGTGCGTTGAACTTCGGCACCGCCAACAGCCTGTTCACCACGGCCACCGGGCAGGTGCTGGGCGGCGGGGGCGGGGCG CTGTCGATCCTGTGCTCGGCCGGCACCACCCCAACGGTCAAGGTTCGGGCCGGCGCCCATGACGGGCTCTCGCCGGGTGG TACTCGCGCACTGTACGACGGGGTCGCCAACTACGTGCCGTATGACCTGTACACCGACGCCGGACACTCGCAGTTGCTGG CCATCGACGGGGTGATCAACCTCGCCGCCAGCACCGGTGTGGCGCAGACCGTGAACATCTACGGTCAGGCGGTGGGCAAG GCCGGGCTGCCGGCGGGCACGTATACCGACACGATTTCCGTCGAACTGACGTTCTAG
Upstream 100 bases:
>100_bases TTGGCTCGGTGGTGGCGAACACCCGAGCGGTACCGGCTGGTGTCTATACCGACACCCTGACGGTGACGCTCGACTGGTAA CCCCGTAGAGGACGAACACC
Downstream 100 bases:
>100_bases TGCCATGGCCCGGCATGGCGGTGCGGTGCTGTTTCTGTTGTGTGCGGGCAGCTTGCCGCTGCCGTTGGCGGCGGTGACCA GCCAGAGCTTTCAGGTCAGT
Product: spore coat U
Products: NA
Alternate protein names: Spore Coat U Domain Protein; Type I Pilus Protein CsuA/B; Spore Coat U; Type 1 Pili Subunit CsuA/B Protein; CsuA Protein
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MRTIASRIGLSLLGLTLASSVNAATTVTGQITSSLILISSCQVNGSGGSTGLNFGALNFGTANSLFTTATGQVLGGGGGA LSILCSAGTTPTVKVRAGAHDGLSPGGTRALYDGVANYVPYDLYTDAGHSQLLAIDGVINLAASTGVAQTVNIYGQAVGK AGLPAGTYTDTISVELTF
Sequences:
>Translated_178_residues MRTIASRIGLSLLGLTLASSVNAATTVTGQITSSLILISSCQVNGSGGSTGLNFGALNFGTANSLFTTATGQVLGGGGGA LSILCSAGTTPTVKVRAGAHDGLSPGGTRALYDGVANYVPYDLYTDAGHSQLLAIDGVINLAASTGVAQTVNIYGQAVGK AGLPAGTYTDTISVELTF >Mature_178_residues MRTIASRIGLSLLGLTLASSVNAATTVTGQITSSLILISSCQVNGSGGSTGLNFGALNFGTANSLFTTATGQVLGGGGGA LSILCSAGTTPTVKVRAGAHDGLSPGGTRALYDGVANYVPYDLYTDAGHSQLLAIDGVINLAASTGVAQTVNIYGQAVGK AGLPAGTYTDTISVELTF
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17560; Mature: 17560
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIASRIGLSLLGLTLASSVNAATTVTGQITSSLILISSCQVNGSGGSTGLNFGALNFG CCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCEEEEEEEEEECCCCCCCCCEECEEECC TANSLFTTATGQVLGGGGGALSILCSAGTTPTVKVRAGAHDGLSPGGTRALYDGVANYVP CCCCEEEECCCEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCC YDLYTDAGHSQLLAIDGVINLAASTGVAQTVNIYGQAVGKAGLPAGTYTDTISVELTF CEEEECCCCCEEEEECCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure MRTIASRIGLSLLGLTLASSVNAATTVTGQITSSLILISSCQVNGSGGSTGLNFGALNFG CCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCEEEEEEEEEECCCCCCCCCEECEEECC TANSLFTTATGQVLGGGGGALSILCSAGTTPTVKVRAGAHDGLSPGGTRALYDGVANYVP CCCCEEEECCCEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCC YDLYTDAGHSQLLAIDGVINLAASTGVAQTVNIYGQAVGKAGLPAGTYTDTISVELTF CEEEECCCCCEEEEECCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA