Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
---|---|
Accession | NC_007492 |
Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77459890
Identifier: 77459890
GI number: 77459890
Start: 4151105
End: 4152076
Strand: Reverse
Name: 77459890
Synonym: Pfl01_3668
Alternate gene names: NA
Gene position: 4152076-4151105 (Counterclockwise)
Preceding gene: 77459891
Following gene: 77459887
Centisome position: 64.49
GC content: 61.93
Gene sequence:
>972_bases ATGATCCGGGCGCGATTTGTTCTGTGGCTGTTGTTGCTGCTGCCGGGGCTGGCGCAGGCGCTGTGTTCGGTGGTGACCAC CACACCGGCCGGGTTCGGGAACATCAGTTCGATCGCCGTGCGCACTACCTCGCAACCCAGTTCTACCTTGAACGGAGGCT TGAGTTGCACCGGTTCGCTGCTGTCGCTGCTGACCAACAATGACCATTTCTGGGCCACCGTCACCTCAACCCAGAGCGGT TTGCTCGGGCCCACCGGTGACGTCATCGGTTACACGATCTACGCCAACAACAGCACCAGTTACCCGCTGACGCGCGGCAC CGCCTATGACTTCGCCCGCAATGGCATCATCGATGCCCTCGGTTTGCTCGGCGGTACGGTGCCGAAAACCGTTCCGCTGT ACTTCGGTACCACCATCGGCAGCAACGTGGCGGCCGGCGTGTATACCGAGACACTGAGCATTTTCTGGAACTGGAATTAT TGTTCGGGCATCGGTGTCGGCGGGCTTTGCCTGGGCCGCGACATCAACAGCGGCACCACGACGCTGACGGTCAACCTGAC GGTGTCCAACGACTGCACCATCACCGCGCCGAACATCGCTTTCGGCAGTGCGCCGGTGGTCAGTGCATTCACCCCGGTGA CCGGGCAGACGATCAACCTCGCCTGCACCAAGGGCAGTGCCTACACGGTGGGTCTGAACGACGGGCAAAATGCACTGAGT GTCGGCGGACGGCGGCGGATGATTTCCGGCAGCAACTATCTGGCCTACGACATTTTCAAGAGCGCCGGGACCACCCGTTG GGGCAGTGTCGGCGCGGCTCGTCGGGCCAGCAGCGATGCCGAGGTCAATCCCGGCAACGGGCTGGGCACCGGCAGCCAGA TCTTCAACTACAACGCGAAAATCTACACCGACCAGACCACACCGCCCGCCGGAACCTACCTGGACAATGTGGTGCTGGAT GTGGGGTTCTGA
Upstream 100 bases:
>100_bases CGCTGCGAGTGACACTTGCGGACGGCAAGACTTGCCAGGCGCAATTCAGTGTCGATCTGCAGCAGGACGAAGTGCCACTG ATCGGCCCGTTGGTGTGCCA
Downstream 100 bases:
>100_bases ACCGGCTAGAAACTCACGGATTGCTGGAGCATTTTCGCCGCCGGGGTATCGGCCGGGCTGACCATCGCGTAGTTGTAGCC CTTGCCGGACCAGTACTCGG
Product: spore coat U
Products: NA
Alternate protein names: Spore Coat U Domain Protein; Type I Pili Chaperone-Usher Pili Assembly System); Spore Coat Protein U Domain-Contain Protein; Type 1 Pili Protein CsuE; Type I Pilus Protein CsuE; Spore Coat U; CsuE Protein; Sigma-Fimbriae Tip Adhesin; Fimbrial Adhesin; Fimbrial Protein; Lipoprotein
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MIRARFVLWLLLLLPGLAQALCSVVTTTPAGFGNISSIAVRTTSQPSSTLNGGLSCTGSLLSLLTNNDHFWATVTSTQSG LLGPTGDVIGYTIYANNSTSYPLTRGTAYDFARNGIIDALGLLGGTVPKTVPLYFGTTIGSNVAAGVYTETLSIFWNWNY CSGIGVGGLCLGRDINSGTTTLTVNLTVSNDCTITAPNIAFGSAPVVSAFTPVTGQTINLACTKGSAYTVGLNDGQNALS VGGRRRMISGSNYLAYDIFKSAGTTRWGSVGAARRASSDAEVNPGNGLGTGSQIFNYNAKIYTDQTTPPAGTYLDNVVLD VGF
Sequences:
>Translated_323_residues MIRARFVLWLLLLLPGLAQALCSVVTTTPAGFGNISSIAVRTTSQPSSTLNGGLSCTGSLLSLLTNNDHFWATVTSTQSG LLGPTGDVIGYTIYANNSTSYPLTRGTAYDFARNGIIDALGLLGGTVPKTVPLYFGTTIGSNVAAGVYTETLSIFWNWNY CSGIGVGGLCLGRDINSGTTTLTVNLTVSNDCTITAPNIAFGSAPVVSAFTPVTGQTINLACTKGSAYTVGLNDGQNALS VGGRRRMISGSNYLAYDIFKSAGTTRWGSVGAARRASSDAEVNPGNGLGTGSQIFNYNAKIYTDQTTPPAGTYLDNVVLD VGF >Mature_323_residues MIRARFVLWLLLLLPGLAQALCSVVTTTPAGFGNISSIAVRTTSQPSSTLNGGLSCTGSLLSLLTNNDHFWATVTSTQSG LLGPTGDVIGYTIYANNSTSYPLTRGTAYDFARNGIIDALGLLGGTVPKTVPLYFGTTIGSNVAAGVYTETLSIFWNWNY CSGIGVGGLCLGRDINSGTTTLTVNLTVSNDCTITAPNIAFGSAPVVSAFTPVTGQTINLACTKGSAYTVGLNDGQNALS VGGRRRMISGSNYLAYDIFKSAGTTRWGSVGAARRASSDAEVNPGNGLGTGSQIFNYNAKIYTDQTTPPAGTYLDNVVLD VGF
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33498; Mature: 33498
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRARFVLWLLLLLPGLAQALCSVVTTTPAGFGNISSIAVRTTSQPSSTLNGGLSCTGSL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCHHHHH LSLLTNNDHFWATVTSTQSGLLGPTGDVIGYTIYANNSTSYPLTRGTAYDFARNGIIDAL HHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEECCCHHHHHHCCHHHHH GLLGGTVPKTVPLYFGTTIGSNVAAGVYTETLSIFWNWNYCSGIGVGGLCLGRDINSGTT HHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCEECCCCCCCEEECCCCCCCCE TLTVNLTVSNDCTITAPNIAFGSAPVVSAFTPVTGQTINLACTKGSAYTVGLNDGQNALS EEEEEEEECCCEEEECCCCCCCCCCHHEEECCCCCCEEEEEEECCCEEEEECCCCCHHHH VGGRRRMISGSNYLAYDIFKSAGTTRWGSVGAARRASSDAEVNPGNGLGTGSQIFNYNAK CCCCEEEECCCCEEEEEEHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEECCE IYTDQTTPPAGTYLDNVVLDVGF EEECCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MIRARFVLWLLLLLPGLAQALCSVVTTTPAGFGNISSIAVRTTSQPSSTLNGGLSCTGSL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCHHHHH LSLLTNNDHFWATVTSTQSGLLGPTGDVIGYTIYANNSTSYPLTRGTAYDFARNGIIDAL HHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEECCCHHHHHHCCHHHHH GLLGGTVPKTVPLYFGTTIGSNVAAGVYTETLSIFWNWNYCSGIGVGGLCLGRDINSGTT HHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCEECCCCCCCEEECCCCCCCCE TLTVNLTVSNDCTITAPNIAFGSAPVVSAFTPVTGQTINLACTKGSAYTVGLNDGQNALS EEEEEEEECCCEEEECCCCCCCCCCHHEEECCCCCCEEEEEEECCCEEEEECCCCCHHHH VGGRRRMISGSNYLAYDIFKSAGTTRWGSVGAARRASSDAEVNPGNGLGTGSQIFNYNAK CCCCEEEECCCCEEEEEEHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEECCE IYTDQTTPPAGTYLDNVVLDVGF EEECCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA