Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is 77459884
Identifier: 77459884
GI number: 77459884
Start: 4145535
End: 4146686
Strand: Direct
Name: 77459884
Synonym: Pfl01_3662
Alternate gene names: NA
Gene position: 4145535-4146686 (Clockwise)
Preceding gene: 77459883
Following gene: 77459885
Centisome position: 64.39
GC content: 60.16
Gene sequence:
>1152_bases ATGACCGTGGCCAAATCTTCGTTCGACATCAGCGCCAACTTCGACAGCGGCAACATCCAAGTCATCGACATCAGCAACCC GCTCAACCCGGTTCTGGCAATTCGGCCAGATACTCGCAGCGGCCATTTCCAGTGGTTCCACTTCAAGGCCAGCGGCCTGC ACGTTCATCAGGAACACTGGTTTCGCTTGGTCAACGCCAGCCAATCCTCGTACAACAAAGCCTGGACCGGTTATCAGGCA GTCGCTTCCTACGACCACGTCAACTGGTTCCGCATTCCGACCCAATTCGAAGGCGACAGCCTGCGCTTCTGCCTTGAAGC CGAGCAGACCCACGCCTGGTTCGCCTACTTCGAGCCTTACAGCCGCGGCCGTCATGACTGGCTGATCGAGCAAGCGCTGA CCAAGGCCGGCACCGAACTGCTGGCCGCCGGTAAAAGCGTCGAAGGCCGCGACATTCAGCTGCTGCGCAAAGGCACCGGC GCCGAAGGTCGCCGCAAGATCTGGATCATTGCCCAGCAACATCCCGGCGAGCACATGGCCGAATGGTTCATGGAAGGCGT GATCGAACGCCTGGAGCATCATGACGATCCGGTATTGAACAAACTGCTGGCCAGCGCTGATCTGTACCTGGTGCCGAACA TGAACCCGGACGGCGCCTTCCACGGTCACCTGCGCACCAACGCCATGGGCCAGGACCTGAACCGCGCCTGGCAGAACGCC AGTCAGGAAGTCAGCCCGGAAGTGCTTTTCGTACAGCAGCAGATGGAAAAGTACGGCGTCGATCTGTTCCTCGACGTACA CGGCGACGAAGAAATTCCCCACGTGTTCACTGCCGGTTGCGAAGGCAATCCGGGCTACACCCCGCGCCTGGAGAAGCTCG AAGAGCACTTCCGCAGCCACCTGAAGCACACCACCAAAGACTTCCAGACCAAGTACGGCTACACCCGCGACGAACCGGGT CAGGCCAACATGACTCTGGCCTGCAACAGCGTCGGCCAGAAGTTCGACTGCCTGTCGCTGACCCTGGAAATGCCATTCAA GGATCACGATGACGCGCCGAACCCGCTCACCGGTTGGTCGGGCAAGCGCTCGAAGCAACTGGGCAAGGACGTGCTGACCA CCATCGCGGACATGGTCGACACCGTGCGCTGA
Upstream 100 bases:
>100_bases CATGGAAGACGCCCCCCGCCGCAACCCGCAATTTCCCTCGGTTTCACCCCTGTCTTGCGTGTAAAGTAGCCGCCATAAAA ATCATATTCAGGAACCGATT
Downstream 100 bases:
>100_bases TCGTCCCCTGATTTTCGCTTCACGAAAGATCGCAGCCTGTCTGCGATCTTTTTTTTGCGCCGACTTTTACCCAATCAGGT TGCAAATCAAAACCGGATTC
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MTVAKSSFDISANFDSGNIQVIDISNPLNPVLAIRPDTRSGHFQWFHFKASGLHVHQEHWFRLVNASQSSYNKAWTGYQA VASYDHVNWFRIPTQFEGDSLRFCLEAEQTHAWFAYFEPYSRGRHDWLIEQALTKAGTELLAAGKSVEGRDIQLLRKGTG AEGRRKIWIIAQQHPGEHMAEWFMEGVIERLEHHDDPVLNKLLASADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQNA SQEVSPEVLFVQQQMEKYGVDLFLDVHGDEEIPHVFTAGCEGNPGYTPRLEKLEEHFRSHLKHTTKDFQTKYGYTRDEPG QANMTLACNSVGQKFDCLSLTLEMPFKDHDDAPNPLTGWSGKRSKQLGKDVLTTIADMVDTVR
Sequences:
>Translated_383_residues MTVAKSSFDISANFDSGNIQVIDISNPLNPVLAIRPDTRSGHFQWFHFKASGLHVHQEHWFRLVNASQSSYNKAWTGYQA VASYDHVNWFRIPTQFEGDSLRFCLEAEQTHAWFAYFEPYSRGRHDWLIEQALTKAGTELLAAGKSVEGRDIQLLRKGTG AEGRRKIWIIAQQHPGEHMAEWFMEGVIERLEHHDDPVLNKLLASADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQNA SQEVSPEVLFVQQQMEKYGVDLFLDVHGDEEIPHVFTAGCEGNPGYTPRLEKLEEHFRSHLKHTTKDFQTKYGYTRDEPG QANMTLACNSVGQKFDCLSLTLEMPFKDHDDAPNPLTGWSGKRSKQLGKDVLTTIADMVDTVR >Mature_382_residues TVAKSSFDISANFDSGNIQVIDISNPLNPVLAIRPDTRSGHFQWFHFKASGLHVHQEHWFRLVNASQSSYNKAWTGYQAV ASYDHVNWFRIPTQFEGDSLRFCLEAEQTHAWFAYFEPYSRGRHDWLIEQALTKAGTELLAAGKSVEGRDIQLLRKGTGA EGRRKIWIIAQQHPGEHMAEWFMEGVIERLEHHDDPVLNKLLASADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQNAS QEVSPEVLFVQQQMEKYGVDLFLDVHGDEEIPHVFTAGCEGNPGYTPRLEKLEEHFRSHLKHTTKDFQTKYGYTRDEPGQ ANMTLACNSVGQKFDCLSLTLEMPFKDHDDAPNPLTGWSGKRSKQLGKDVLTTIADMVDTVR
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=298, Percent_Identity=28.5234899328859, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI222352158, Length=306, Percent_Identity=25.8169934640523, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI31657119, Length=308, Percent_Identity=24.025974025974, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI170763513, Length=325, Percent_Identity=24, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI120444924, Length=329, Percent_Identity=24.9240121580547, Blast_Score=77, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115533904, Length=368, Percent_Identity=27.445652173913, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI193202888, Length=306, Percent_Identity=26.1437908496732, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24641847, Length=322, Percent_Identity=25.1552795031056, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571179, Length=322, Percent_Identity=25.1552795031056, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI161077807, Length=317, Percent_Identity=24.9211356466877, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24641845, Length=322, Percent_Identity=25.1552795031056, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24651466, Length=325, Percent_Identity=24.6153846153846, Blast_Score=81, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 43551; Mature: 43420
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAKSSFDISANFDSGNIQVIDISNPLNPVLAIRPDTRSGHFQWFHFKASGLHVHQEHW CCCCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCEEEEHHHH FRLVNASQSSYNKAWTGYQAVASYDHVNWFRIPTQFEGDSLRFCLEAEQTHAWFAYFEPY HHHHCCCCCCCCHHCCCHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECHH SRGRHDWLIEQALTKAGTELLAAGKSVEGRDIQLLRKGTGAEGRRKIWIIAQQHPGEHMA HCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCHHHH EWFMEGVIERLEHHDDPVLNKLLASADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQNA HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCEECCEECCCCHHHHHHHHHCC SQEVSPEVLFVQQQMEKYGVDLFLDVHGDEEIPHVFTAGCEGNPGYTPRLEKLEEHFRSH CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH LKHTTKDFQTKYGYTRDEPGQANMTLACNSVGQKFDCLSLTLEMPFKDHDDAPNPLTGWS HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC GKRSKQLGKDVLTTIADMVDTVR CCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TVAKSSFDISANFDSGNIQVIDISNPLNPVLAIRPDTRSGHFQWFHFKASGLHVHQEHW CCCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCEEEEHHHH FRLVNASQSSYNKAWTGYQAVASYDHVNWFRIPTQFEGDSLRFCLEAEQTHAWFAYFEPY HHHHCCCCCCCCHHCCCHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECHH SRGRHDWLIEQALTKAGTELLAAGKSVEGRDIQLLRKGTGAEGRRKIWIIAQQHPGEHMA HCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCHHHH EWFMEGVIERLEHHDDPVLNKLLASADLYLVPNMNPDGAFHGHLRTNAMGQDLNRAWQNA HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCEECCEECCCCHHHHHHHHHCC SQEVSPEVLFVQQQMEKYGVDLFLDVHGDEEIPHVFTAGCEGNPGYTPRLEKLEEHFRSH CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH LKHTTKDFQTKYGYTRDEPGQANMTLACNSVGQKFDCLSLTLEMPFKDHDDAPNPLTGWS HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC GKRSKQLGKDVLTTIADMVDTVR CCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]