Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
---|---|
Accession | NC_007492 |
Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is ugpC [H]
Identifier: 77459857
GI number: 77459857
Start: 4108666
End: 4109760
Strand: Reverse
Name: ugpC [H]
Synonym: Pfl01_3635
Alternate gene names: 77459857
Gene position: 4109760-4108666 (Counterclockwise)
Preceding gene: 77459859
Following gene: 77459856
Centisome position: 63.83
GC content: 61.83
Gene sequence:
>1095_bases ATGTCACTCACCCTGGAGCACGTCAGCCGTACCGTCGAGGGCCAGACCTGGATCGACGATGCGAGCCTGAAATTCGAACC TGGATCCTTCAACGTTTTGCTCGGGCGCACGCTGTCCGGCAAGACCAGTCTGATGCGTCTGATGGCCGGTCTGGACAAGC CCGACAGCGGCCGCATCCTGATGAACGGCGTCGACGTCATCCAGCGCCCGGTGCGGTTGCGCAACGTGTCGATGGTCTAT CAGCAGTTCATCAATTACCCGACCATGACGGTGTTCGAGAACATCGCCTCGCCGCTGCGCCAGGCCGGGATCTCCAACGA GCAGATCCAGAGCAAGGTGCAGGAAACCGCGAAGATGCTGCGCATCGAGAAATTCCTGAAGCGCTATCCGCTGGAACTGT CCGGTGGCCAGCAGCAGCGCACCGCGATGGCGCGGGCGCTGGTCAAGGATGCCGAACTGATTCTGTTCGACGAGCCGCTG GTCAACCTCGACTACAAACTGCGCGAAGAATTGCGCCAGGAAATGCGCGAGCTGTTCAAGGCGCGCCACACCATCGCCAT CTACGCCACCACCGAGCCCAATGAAGCGCTGGCGCTGGGCGGCACCACCACCATTCTTCATGAAGGCCGGGTGATCCAGA GCGGCCCTTCGACCGAGGTCTATCACCAGCCGCAAACGGTGCTGGCCGCCGAATTGTTCTCCGAGCCACCGATCAACCTG ATGCCGGGGCGTATTGCCGGCAACGAAGTGAGCTTCGCCAACTTCGTGCACTTTCCGTTGAACGTCGATCTGCGACCGGT GGGCGAGGGCGAGTTCCGTTTCGGCGTGCGCCCGAGTCATATCTCGCTGGTGCCGAGCAACGACGACGACCTGGAACTGG CGGTGACCGTCGAGGTGGCGGAGATCAGCGGGTCGGAAACCTTCCTCCACGTGCGCAACGAGCATTTCCTGCTGGTGCTG CATTTGCCCGGCGTTCACGAATACGACGTCGATGCGCCGATCCGCATCTACATTCCGACCCATAAACTGTTTGTGTTCGA TGCGCAGGGCCGTCTGGTGCAGGCACCGGGCCGGCGTGTCGCGAGGGTTGCCTGA
Upstream 100 bases:
>100_bases TTGCAGCGAATTCGACGGTAAATCAAAGGCTTGGCGTTTCTGGCACGAATGTCGCTCTACAGGACAGGTCGCTTGACTCC AATAATAAAAAGGCCGAGCC
Downstream 100 bases:
>100_bases TGGCCGAAATCCGTTTGCAGCACCTCGCCCACAGCTACAGTAAAACCCCGAGCGGGCCCGAGGACTATGCGATCCGCGAG ATGGACCACATCTGGGAGCA
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MSLTLEHVSRTVEGQTWIDDASLKFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRILMNGVDVIQRPVRLRNVSMVY QQFINYPTMTVFENIASPLRQAGISNEQIQSKVQETAKMLRIEKFLKRYPLELSGGQQQRTAMARALVKDAELILFDEPL VNLDYKLREELRQEMRELFKARHTIAIYATTEPNEALALGGTTTILHEGRVIQSGPSTEVYHQPQTVLAAELFSEPPINL MPGRIAGNEVSFANFVHFPLNVDLRPVGEGEFRFGVRPSHISLVPSNDDDLELAVTVEVAEISGSETFLHVRNEHFLLVL HLPGVHEYDVDAPIRIYIPTHKLFVFDAQGRLVQAPGRRVARVA
Sequences:
>Translated_364_residues MSLTLEHVSRTVEGQTWIDDASLKFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRILMNGVDVIQRPVRLRNVSMVY QQFINYPTMTVFENIASPLRQAGISNEQIQSKVQETAKMLRIEKFLKRYPLELSGGQQQRTAMARALVKDAELILFDEPL VNLDYKLREELRQEMRELFKARHTIAIYATTEPNEALALGGTTTILHEGRVIQSGPSTEVYHQPQTVLAAELFSEPPINL MPGRIAGNEVSFANFVHFPLNVDLRPVGEGEFRFGVRPSHISLVPSNDDDLELAVTVEVAEISGSETFLHVRNEHFLLVL HLPGVHEYDVDAPIRIYIPTHKLFVFDAQGRLVQAPGRRVARVA >Mature_363_residues SLTLEHVSRTVEGQTWIDDASLKFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRILMNGVDVIQRPVRLRNVSMVYQ QFINYPTMTVFENIASPLRQAGISNEQIQSKVQETAKMLRIEKFLKRYPLELSGGQQQRTAMARALVKDAELILFDEPLV NLDYKLREELRQEMRELFKARHTIAIYATTEPNEALALGGTTTILHEGRVIQSGPSTEVYHQPQTVLAAELFSEPPINLM PGRIAGNEVSFANFVHFPLNVDLRPVGEGEFRFGVRPSHISLVPSNDDDLELAVTVEVAEISGSETFLHVRNEHFLLVLH LPGVHEYDVDAPIRIYIPTHKLFVFDAQGRLVQAPGRRVARVA
Specific function: Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system [H]
COG id: COG3839
COG function: function code G; ABC-type sugar transport systems, ATPase components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=225, Percent_Identity=30.6666666666667, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI21536376, Length=208, Percent_Identity=27.4038461538462, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI116734710, Length=223, Percent_Identity=25.1121076233184, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI27436953, Length=193, Percent_Identity=26.4248704663212, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=27.0935960591133, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31657092, Length=218, Percent_Identity=26.605504587156, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI27477115, Length=194, Percent_Identity=25.7731958762887, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI62526033, Length=206, Percent_Identity=29.6116504854369, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=27.6995305164319, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=27.6995305164319, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI9961250, Length=210, Percent_Identity=28.0952380952381, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=26.0330578512397, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI42741659, Length=244, Percent_Identity=27.0491803278689, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI87082267, Length=351, Percent_Identity=33.048433048433, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI87081709, Length=279, Percent_Identity=35.1254480286738, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI87081791, Length=320, Percent_Identity=32.5, Blast_Score=179, Evalue=3e-46, Organism=Escherichia coli, GI1790467, Length=319, Percent_Identity=33.8557993730408, Blast_Score=171, Evalue=7e-44, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=36.480686695279, Blast_Score=166, Evalue=3e-42, Organism=Escherichia coli, GI1788761, Length=367, Percent_Identity=30.5177111716621, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1787712, Length=313, Percent_Identity=28.4345047923323, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1789032, Length=213, Percent_Identity=33.3333333333333, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1788450, Length=253, Percent_Identity=31.6205533596838, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=34.0425531914894, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=30.8080808080808, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=31.6582914572864, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=29.6610169491525, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=31.651376146789, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=27.5109170305677, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788644, Length=227, Percent_Identity=30.8370044052863, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87081834, Length=192, Percent_Identity=31.7708333333333, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787500, Length=289, Percent_Identity=26.9896193771626, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1786398, Length=230, Percent_Identity=24.7826086956522, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=28.3333333333333, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=30.8823529411765, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786563, Length=216, Percent_Identity=31.4814814814815, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=28.9099526066351, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789586, Length=232, Percent_Identity=29.7413793103448, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=27.7511961722488, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786703, Length=169, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787547, Length=248, Percent_Identity=27.0161290322581, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1788210, Length=221, Percent_Identity=27.6018099547511, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081782, Length=170, Percent_Identity=32.3529411764706, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=25.2173913043478, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI145693107, Length=242, Percent_Identity=25.2066115702479, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788506, Length=243, Percent_Identity=27.1604938271605, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=226, Percent_Identity=26.9911504424779, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790534, Length=171, Percent_Identity=29.8245614035088, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1787759, Length=266, Percent_Identity=24.812030075188, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786981, Length=253, Percent_Identity=28.4584980237154, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786345, Length=257, Percent_Identity=25.6809338521401, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787143, Length=178, Percent_Identity=32.0224719101124, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=27.4261603375527, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789593, Length=230, Percent_Identity=25.2173913043478, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994883, Length=225, Percent_Identity=25.7777777777778, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787112, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787758, Length=221, Percent_Identity=24.8868778280543, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=27.5555555555556, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790739, Length=255, Percent_Identity=26.2745098039216, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788165, Length=180, Percent_Identity=31.1111111111111, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=23.4567901234568, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=24.0384615384615, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=27.6699029126214, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=27.6699029126214, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=27.6699029126214, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193202349, Length=180, Percent_Identity=31.6666666666667, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17541710, Length=181, Percent_Identity=32.0441988950276, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558664, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193208177, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115535101, Length=184, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567269, Length=184, Percent_Identity=28.804347826087, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115533592, Length=190, Percent_Identity=25.7894736842105, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17543740, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565938, Length=183, Percent_Identity=28.4153005464481, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=232, Percent_Identity=26.7241379310345, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6323959, Length=229, Percent_Identity=26.6375545851528, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324985, Length=226, Percent_Identity=23.4513274336283, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=29.0322580645161, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007184, Length=220, Percent_Identity=28.6363636363636, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=29.1079812206573, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI221512771, Length=202, Percent_Identity=28.2178217821782, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI23397593, Length=219, Percent_Identity=26.4840182648402, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85726357, Length=212, Percent_Identity=26.4150943396226, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573573, Length=205, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=24.3119266055046, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648314, Length=217, Percent_Identity=25.3456221198157, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI17136662, Length=203, Percent_Identity=23.6453201970443, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007328, Length=203, Percent_Identity=26.1083743842365, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574150, Length=203, Percent_Identity=26.1083743842365, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI85725262, Length=184, Percent_Identity=28.2608695652174, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR017922 - InterPro: IPR008995 - InterPro: IPR013611 [H]
Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]
EC number: =3.6.3.20 [H]
Molecular weight: Translated: 40874; Mature: 40742
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTLEHVSRTVEGQTWIDDASLKFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRIL CCEEHHHHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEE MNGVDVIQRPVRLRNVSMVYQQFINYPTMTVFENIASPLRQAGISNEQIQSKVQETAKML ECCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RIEKFLKRYPLELSGGQQQRTAMARALVKDAELILFDEPLVNLDYKLREELRQEMRELFK HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH ARHTIAIYATTEPNEALALGGTTTILHEGRVIQSGPSTEVYHQPQTVLAAELFSEPPINL CCCEEEEEEECCCCCEEEECCCEEEEECCEEEECCCCCCEEECCHHHHHHHHHCCCCCCC MPGRIAGNEVSFANFVHFPLNVDLRPVGEGEFRFGVRPSHISLVPSNDDDLELAVTVEVA CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEECCCCCEEEEECCCCCCEEEEEEEEEE EISGSETFLHVRNEHFLLVLHLPGVHEYDVDAPIRIYIPTHKLFVFDAQGRLVQAPGRRV ECCCCEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEECEEEEEEECCCCEEECCCCEE ARVA ECCC >Mature Secondary Structure SLTLEHVSRTVEGQTWIDDASLKFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRIL CEEHHHHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEE MNGVDVIQRPVRLRNVSMVYQQFINYPTMTVFENIASPLRQAGISNEQIQSKVQETAKML ECCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RIEKFLKRYPLELSGGQQQRTAMARALVKDAELILFDEPLVNLDYKLREELRQEMRELFK HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH ARHTIAIYATTEPNEALALGGTTTILHEGRVIQSGPSTEVYHQPQTVLAAELFSEPPINL CCCEEEEEEECCCCCEEEECCCEEEEECCEEEECCCCCCEEECCHHHHHHHHHCCCCCCC MPGRIAGNEVSFANFVHFPLNVDLRPVGEGEFRFGVRPSHISLVPSNDDDLELAVTVEVA CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEECCCCCEEEEECCCCCCEEEEEEEEEE EISGSETFLHVRNEHFLLVLHLPGVHEYDVDAPIRIYIPTHKLFVFDAQGRLVQAPGRRV ECCCCEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEECEEEEEEECCCCEEECCCCEE ARVA ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA