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The map label for this gene is ycfD [H]

Identifier: 77459821

GI number: 77459821

Start: 4068140

End: 4069315

Strand: Direct

Name: ycfD [H]

Synonym: Pfl01_3599

Alternate gene names: 77459821

Gene position: 4068140-4069315 (Clockwise)

Preceding gene: 77459820

Following gene: 77459822

Centisome position: 63.19

GC content: 62.67

Gene sequence:

>1176_bases
ATGAATCCCGATATTCCTCTTCAACTTCTGGGTGGTCTTACGGCGCGCGAATTCATGCGCGATTACTGGCAGAAAAAACC
ACTGCTGATCCGTCAGGCGATTCCTGATTTCGAAAGCCCGATCGACGCCGACGAACTCGCCGGCCTGGCCCTGGAAGAAG
AAGTCGAATCGCGCCTGGTGATCGAGCACGGCGAGCGTCCATGGGAACTGCGTCGCGGCCCGTTCGCCGAAGACGAATTC
AGCAAACTGCCGGAGCGCGAGTGGACCCTGCTGGTGCAGGCGGTCGATCAGTTCGTGCCGGAAGTCAGCGAGCTGCTGGA
AAACTTCCGCTTCCTGCCGAGCTGGCGCGTCGACGACGTGATGATCAGCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGC
ACTTCGATAACTACGACGTGTTCCTGCTGCAAGGCCACGGCAAGCGCAACTGGAAAATCGGCCAGATGTGCGACTCCGAA
AGCCCGCTGCTGCAACACGCCGACCTGCGCATCCTCGCCGAATTCCACGAGACTGAAGAGTGGGTCCTGGAACCGGGCGA
CATGCTCTACCTGCCACCGCGCCTGGCCCACTGCGGTGTTGCCGTCGACGACTGCATGACCTACTCGGTCGGTTTCCGCG
CACCAAGCGCCGCAGAAGTGCTGACCCACTTCACCGACTTCCTCAGCCAGTTCCTGACTGACGAAGAGCGTTATACCGAC
GCCGATGCAAAACCGGTCAGCGATGATCCACATCAGATCCAGCACGATGCCCTCGGCCGCCTGAAAGCGCTGCTCGCCGA
GCACATGAGCGACGAACGCCTGCTGCTGACCTGGTTCGGCCAGTACATGACCGAGCCGCGCTATCCGGAGCTGGTGGTCG
GGCCGGAAGAAGTCGAGGAAGAAGACCTCCTCGGCGCGCTCGAAGACGGCGCCATCCTGATCCGCAATCCGAGCGCGCGC
CTGGCGTGGTCGGACGTCGATGACGATCTGCTGCTGTTCGCCAGCGGCCAGAGCCGCTACCTGCCGGGCAAGCTGCGCGA
ACTGCTGAAGCTGATCTGCTCCGCCGACGCCCTGCACACCGACAACCTCGGTGACTGGCTGAGCGACGAAGACGGTCGCG
GCCTGCTGTGCGAACTGGTCAAACAGGGAAGCCTGGGGTTCGCCGACGATGAATAA

Upstream 100 bases:

>100_bases
CCAAACGCATCTGATCGACTGCTTGACCCGTTTGAGACGCCCGGCCGCGCCGGGCGTTTTTATTCCCGTCTGAAAAATGC
TTTTTTTCAATAGGTTACAT

Downstream 100 bases:

>100_bases
GATTCGCGTACGTGTTGCAGACTGGCAAAAGGACAACGCCGAGATCCGCCGCATTCGCGAAACGGTGTTCATTGCCGAAC
AATCGGTTCCACCCGAGCTT

Product: transcription factor jumonji, jmjC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MNPDIPLQLLGGLTAREFMRDYWQKKPLLIRQAIPDFESPIDADELAGLALEEEVESRLVIEHGERPWELRRGPFAEDEF
SKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRVDDVMISFAAPGGSVGPHFDNYDVFLLQGHGKRNWKIGQMCDSE
SPLLQHADLRILAEFHETEEWVLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLTDEERYTD
ADAKPVSDDPHQIQHDALGRLKALLAEHMSDERLLLTWFGQYMTEPRYPELVVGPEEVEEEDLLGALEDGAILIRNPSAR
LAWSDVDDDLLLFASGQSRYLPGKLRELLKLICSADALHTDNLGDWLSDEDGRGLLCELVKQGSLGFADDE

Sequences:

>Translated_391_residues
MNPDIPLQLLGGLTAREFMRDYWQKKPLLIRQAIPDFESPIDADELAGLALEEEVESRLVIEHGERPWELRRGPFAEDEF
SKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRVDDVMISFAAPGGSVGPHFDNYDVFLLQGHGKRNWKIGQMCDSE
SPLLQHADLRILAEFHETEEWVLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLTDEERYTD
ADAKPVSDDPHQIQHDALGRLKALLAEHMSDERLLLTWFGQYMTEPRYPELVVGPEEVEEEDLLGALEDGAILIRNPSAR
LAWSDVDDDLLLFASGQSRYLPGKLRELLKLICSADALHTDNLGDWLSDEDGRGLLCELVKQGSLGFADDE
>Mature_391_residues
MNPDIPLQLLGGLTAREFMRDYWQKKPLLIRQAIPDFESPIDADELAGLALEEEVESRLVIEHGERPWELRRGPFAEDEF
SKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRVDDVMISFAAPGGSVGPHFDNYDVFLLQGHGKRNWKIGQMCDSE
SPLLQHADLRILAEFHETEEWVLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLTDEERYTD
ADAKPVSDDPHQIQHDALGRLKALLAEHMSDERLLLTWFGQYMTEPRYPELVVGPEEVEEEDLLGALEDGAILIRNPSAR
LAWSDVDDDLLLFASGQSRYLPGKLRELLKLICSADALHTDNLGDWLSDEDGRGLLCELVKQGSLGFADDE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=377, Percent_Identity=36.604774535809, Blast_Score=239, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44317; Mature: 44317

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDIPLQLLGGLTAREFMRDYWQKKPLLIRQAIPDFESPIDADELAGLALEEEVESRLV
CCCCCCHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHH
IEHGERPWELRRGPFAEDEFSKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRVDDV
HHCCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
MISFAAPGGSVGPHFDNYDVFLLQGHGKRNWKIGQMCDSESPLLQHADLRILAEFHETEE
EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHCCHH
WVLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLTDEERYTD
HEECCCCEEEECCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCC
ADAKPVSDDPHQIQHDALGRLKALLAEHMSDERLLLTWFGQYMTEPRYPELVVGPEEVEE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEECHHHHCH
EDLLGALEDGAILIRNPSARLAWSDVDDDLLLFASGQSRYLPGKLRELLKLICSADALHT
HHHHHHHCCCEEEEECCCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCC
DNLGDWLSDEDGRGLLCELVKQGSLGFADDE
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNPDIPLQLLGGLTAREFMRDYWQKKPLLIRQAIPDFESPIDADELAGLALEEEVESRLV
CCCCCCHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHH
IEHGERPWELRRGPFAEDEFSKLPEREWTLLVQAVDQFVPEVSELLENFRFLPSWRVDDV
HHCCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
MISFAAPGGSVGPHFDNYDVFLLQGHGKRNWKIGQMCDSESPLLQHADLRILAEFHETEE
EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHCCHH
WVLEPGDMLYLPPRLAHCGVAVDDCMTYSVGFRAPSAAEVLTHFTDFLSQFLTDEERYTD
HEECCCCEEEECCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCC
ADAKPVSDDPHQIQHDALGRLKALLAEHMSDERLLLTWFGQYMTEPRYPELVVGPEEVEE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEECHHHHCH
EDLLGALEDGAILIRNPSARLAWSDVDDDLLLFASGQSRYLPGKLRELLKLICSADALHT
HHHHHHHCCCEEEEECCCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCC
DNLGDWLSDEDGRGLLCELVKQGSLGFADDE
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]