| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is icd [H]
Identifier: 77459816
GI number: 77459816
Start: 4062001
End: 4064226
Strand: Direct
Name: icd [H]
Synonym: Pfl01_3594
Alternate gene names: 77459816
Gene position: 4062001-4064226 (Clockwise)
Preceding gene: 77459814
Following gene: 77459817
Centisome position: 63.09
GC content: 60.56
Gene sequence:
>2226_bases ATGCCCACCCGCTCGAAGATCATCTATACCTTCACCGACGAAGCTCCAGCCCTCGCCACCTATTCCCTGCTGCCGATCAT CGAGGCCTACACCGCCTCGGCCGATATCGCCGTGGAAACCCGCGATATCTCTCTTGCAGCACGCATTCTGGCCAGCTTCC CCGAGCAACTGGGCGACAAAGCCGTAGCCGACCACCTCGCCGAACTGGGCGACCTGGCCGTTACGCCTGAAGCCAACATC ATCAAGCTGCCGAACATCAGCGCTTCGGTTCCGCAGTTGCAAGCCGCGATCAAAGAACTGCAAGCCCAGGGCTACAACCT GCCGGACTACCCGGAATCCGTGACCAACGACGCCGAAAAAGAAGCCAAGGCGCGTTACGACAAGGTCAAGGGCAGCGCCG TGAACCCGGTTCTGCGTGAAGGCAACTCCGACCGTCGTGCGCCGCTGTCGGTCAAGAACTACGCTCGCAAGCACCCGCAC AAAATGGGCGCCTGGGCCAAAGACTCCAAGTCTCATGTCGCTCACATGAGCACCGGCGATTTCTATGGCAGCGAAAAAGC TGTCCTGATCGACGCCGCTGACGCCGTGAAGATCGAACTGATCGCCAAAGACGGCACCGCGACCGTCCTGAAAGAAAAGA CCACCGTTCAGGCGGGCGAGATCCTCGACTGCTCCGTGATGAGCAAAAAGGCCCTGCGCGCGTTCATCGCCGCCGAAATC GACAGCGCCAAGCAGCAAGGCGTGCTGCTGTCGGTTCACCTGAAAGCCACCATGATGAAGGTCTCCGACCCGATCATGTT CGGCCAGATCGTTGCCGAGTTCTACAAAGACGCCCTGACCAAGCACGCCGACGTGCTGGCCGAGATCGGCTTCAACCTGA ACAACGGCATCGGCGACCTGTACGCCCGCATCAAATCCCTGCCGGCCGAACAACAAGCCCAGATCGAAGCTGACGTGCAG GCTGTCTACGCCGTTCGTCCGTCGCTGGCGATGGTCAACTCCGACAAAGGCATCACCAACCTGCACGTGCCGAGCGACGT TATCGTCGACGCCTCGATGCCGGCCATGATCCGTGACTCCGGCAAGATGTGGGGCACTGACGGCCAGTTGCACGACACCA AGGCTGTGATCCCGGATCGCTGCTACGCCACCATCTACCAGGCCGTGATCGAAGATTGCAAAGCCAATGGCGCTTTCGAT CCGACCACCATGGGCAGCGTGCCAAACGTTGGCCTGATGGCTAAAAAGGCTGAAGAGTACGGCTCCCACGACAAAACCTT CCAGATCAAGGCCGACGGCGTGGTTCGCGTGACCGACAGCAAAGGCACCCTGCTGATGGAACAGGCTGTTGAAGCCGGCG ACATCTTCCGCATGTGCCAGACCAAAGACGCGCCGATCCAGGACTGGGTCAAACTGGCCGTCAACCGTGCTCGCGCAAGC GCAACTCCAGCCATTTTCTGGCTGGACCCGATGCGCGCCCACGACGGCGTGGTGATCGAGAAGGTTCAGGCTTACCTGAA GGATCACGACACCGCCGGTCTGGACATCCAGATCATGGCGCCGGTCGATGCCATGAAATACACCCTGCAGCGCACCCGCG AAGGCAAGGACACCATTTCGGTGACCGGCAACGTACTGCGCGACTACCTGACAGACCTGTTCCCGATCATGGAACTGGGC ACCAGCGCCAAGATGCTGTCGATCGTGCCGCTGATGAACGGCGGTGGCCTGTTCGAAACCGGCGCCGGCGGTTCGGCTCC GAAGCACGTGCAGCAACTGGTCGAAGAGAACTTCCTGCGCTGGGATTCGCTGGGTGAATTCTTGGCCCTGGCCGCTTCTC TCGAGCACCTGGGTGTTAACTACAACAACCCGAAAGCGCTGGTTCTGTCCAAGACCCTGGATCAGGCCACCGGCCAGTTC CTCGACAACAACAAGTCGCCATCGCGCAAAGTCGGCAACATCGACAACCGCGGCAGCCACTTCTACCTGGCGATGTACTG GGCACAAGCCCTGGCCGCCCAGACTGAAGACGCTGCACTGCAAGCGCAGTTCGCGACTCTGGCCAAGACCCTGACCGAGA ACGAAGCGACCATCGTCGCCGAGCTCAACGCCGTTCAAGGCAAGCCAGTGGACATCGGCGGTTACTACCACGCCGATGCC GAGCTGATCAGCAAGGCCATGCGCCCAAGCGCAACCCTCAACGCGGCGATTGCTGCGCTGGTATAA
Upstream 100 bases:
>100_bases TCGACATTCGGTTCATGGATGACTTTGAACGAACGCGCTTACCCGGCGCCCCTCGAGTTTCTGCGCACGCTTTAGCAAAG AAGAGAGAGTTAATCCGAAT
Downstream 100 bases:
>100_bases GGTTGTAAAGGGAACATCACAAACCCCGGCCTCGTGCCGGGGTTTGTGTTTCTGCCTTTCGCCCAGGAGATTCAATCAAT GCAATGGCTCCCCCACATCA
Product: isocitrate dehydrogenase (NADP+)
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MPTRSKIIYTFTDEAPALATYSLLPIIEAYTASADIAVETRDISLAARILASFPEQLGDKAVADHLAELGDLAVTPEANI IKLPNISASVPQLQAAIKELQAQGYNLPDYPESVTNDAEKEAKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPH KMGAWAKDSKSHVAHMSTGDFYGSEKAVLIDAADAVKIELIAKDGTATVLKEKTTVQAGEILDCSVMSKKALRAFIAAEI DSAKQQGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALTKHADVLAEIGFNLNNGIGDLYARIKSLPAEQQAQIEADVQ AVYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFD PTTMGSVPNVGLMAKKAEEYGSHDKTFQIKADGVVRVTDSKGTLLMEQAVEAGDIFRMCQTKDAPIQDWVKLAVNRARAS ATPAIFWLDPMRAHDGVVIEKVQAYLKDHDTAGLDIQIMAPVDAMKYTLQRTREGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQF LDNNKSPSRKVGNIDNRGSHFYLAMYWAQALAAQTEDAALQAQFATLAKTLTENEATIVAELNAVQGKPVDIGGYYHADA ELISKAMRPSATLNAAIAALV
Sequences:
>Translated_741_residues MPTRSKIIYTFTDEAPALATYSLLPIIEAYTASADIAVETRDISLAARILASFPEQLGDKAVADHLAELGDLAVTPEANI IKLPNISASVPQLQAAIKELQAQGYNLPDYPESVTNDAEKEAKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPH KMGAWAKDSKSHVAHMSTGDFYGSEKAVLIDAADAVKIELIAKDGTATVLKEKTTVQAGEILDCSVMSKKALRAFIAAEI DSAKQQGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALTKHADVLAEIGFNLNNGIGDLYARIKSLPAEQQAQIEADVQ AVYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFD PTTMGSVPNVGLMAKKAEEYGSHDKTFQIKADGVVRVTDSKGTLLMEQAVEAGDIFRMCQTKDAPIQDWVKLAVNRARAS ATPAIFWLDPMRAHDGVVIEKVQAYLKDHDTAGLDIQIMAPVDAMKYTLQRTREGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQF LDNNKSPSRKVGNIDNRGSHFYLAMYWAQALAAQTEDAALQAQFATLAKTLTENEATIVAELNAVQGKPVDIGGYYHADA ELISKAMRPSATLNAAIAALV >Mature_740_residues PTRSKIIYTFTDEAPALATYSLLPIIEAYTASADIAVETRDISLAARILASFPEQLGDKAVADHLAELGDLAVTPEANII KLPNISASVPQLQAAIKELQAQGYNLPDYPESVTNDAEKEAKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHK MGAWAKDSKSHVAHMSTGDFYGSEKAVLIDAADAVKIELIAKDGTATVLKEKTTVQAGEILDCSVMSKKALRAFIAAEID SAKQQGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALTKHADVLAEIGFNLNNGIGDLYARIKSLPAEQQAQIEADVQA VYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFDP TTMGSVPNVGLMAKKAEEYGSHDKTFQIKADGVVRVTDSKGTLLMEQAVEAGDIFRMCQTKDAPIQDWVKLAVNRARASA TPAIFWLDPMRAHDGVVIEKVQAYLKDHDTAGLDIQIMAPVDAMKYTLQRTREGKDTISVTGNVLRDYLTDLFPIMELGT SAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFL DNNKSPSRKVGNIDNRGSHFYLAMYWAQALAAQTEDAALQAQFATLAKTLTENEATIVAELNAVQGKPVDIGGYYHADAE LISKAMRPSATLNAAIAALV
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80061; Mature: 79930
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: PS00334 MYB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRSKIIYTFTDEAPALATYSLLPIIEAYTASADIAVETRDISLAARILASFPEQLGDK CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCHH AVADHLAELGDLAVTPEANIIKLPNISASVPQLQAAIKELQAQGYNLPDYPESVTNDAEK HHHHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHH EAKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWAKDSKSHVAHMSTGD HHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCEEEECCCC FYGSEKAVLIDAADAVKIELIAKDGTATVLKEKTTVQAGEILDCSVMSKKALRAFIAAEI CCCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHH DSAKQQGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALTKHADVLAEIGFNLNNGIGDL HHHHHCCEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH YARIKSLPAEQQAQIEADVQAVYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDS HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHHCC GKMWGTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFDPTTMGSVPNVGLMAKKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH GSHDKTFQIKADGVVRVTDSKGTLLMEQAVEAGDIFRMCQTKDAPIQDWVKLAVNRARAS CCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC ATPAIFWLDPMRAHDGVVIEKVQAYLKDHDTAGLDIQIMAPVDAMKYTLQRTREGKDTIS CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEE VTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH WDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSH HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE FYLAMYWAQALAAQTEDAALQAQFATLAKTLTENEATIVAELNAVQGKPVDIGGYYHADA EEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCEEECCH ELISKAMRPSATLNAAIAALV HHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure PTRSKIIYTFTDEAPALATYSLLPIIEAYTASADIAVETRDISLAARILASFPEQLGDK CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCHH AVADHLAELGDLAVTPEANIIKLPNISASVPQLQAAIKELQAQGYNLPDYPESVTNDAEK HHHHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHH EAKARYDKVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWAKDSKSHVAHMSTGD HHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCEEEECCCC FYGSEKAVLIDAADAVKIELIAKDGTATVLKEKTTVQAGEILDCSVMSKKALRAFIAAEI CCCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHH DSAKQQGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALTKHADVLAEIGFNLNNGIGDL HHHHHCCEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH YARIKSLPAEQQAQIEADVQAVYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDS HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHHCC GKMWGTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFDPTTMGSVPNVGLMAKKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH GSHDKTFQIKADGVVRVTDSKGTLLMEQAVEAGDIFRMCQTKDAPIQDWVKLAVNRARAS CCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC ATPAIFWLDPMRAHDGVVIEKVQAYLKDHDTAGLDIQIMAPVDAMKYTLQRTREGKDTIS CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEE VTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH WDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSH HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE FYLAMYWAQALAAQTEDAALQAQFATLAKTLTENEATIVAELNAVQGKPVDIGGYYHADA EEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCEEECCH ELISKAMRPSATLNAAIAALV HHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]