| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ykvO [H]
Identifier: 77458952
GI number: 77458952
Start: 3143895
End: 3144653
Strand: Direct
Name: ykvO [H]
Synonym: Pfl01_2727
Alternate gene names: 77458952
Gene position: 3143895-3144653 (Clockwise)
Preceding gene: 77458950
Following gene: 77458954
Centisome position: 48.83
GC content: 57.58
Gene sequence:
>759_bases ATGTCAGGTAAATTCAGTGATCAGGTTGCCGTCGTGACCGGCGGTTCCACAGGGATCGGGTTTTCCATCGCGCAAGCCTT GATCGCCGAGGGCGCCAAACGCGTTTACATCACTGCACGGGCAGCAGACAGGCTGGAGGCGGCAGTTGCCAGACTCGGCG ACAAAGCTGTCGCGGTGGTTTCCGATGTCTCGCGTCAGGCTGATCTCGACGCGCTCAAAGCGACAATCCAAACGCGCGAC GATCGGCTGGACGCAGTGTTCGCAAATGCCGGGATCTGTGAGAAAAATCCGCTCGGAGAGACCAGCGAGGCTGCTTACTA CGCCATGTTCGACGTGAACGTGAAAGGCGTTTTCTTCAGCGTTCAAACGCTTCTTCCGTTGATGAAAGACGCTTCGTCCA TCGTCTTGACTGCCTCAATCTGCTCCAGCAACGGCATGGAAGGATTGAGTCTGTACAACGCGTCGAAGGCGGCGGTCCGA TCGTTTGCACGCACGTGGGCCAATGAACTCAAGGACCGCAAAATCCGCGCAAACGTGTTGAGCCCTGGCTTCACCCGCAC ACCGCTGATGGACAACGGGCTGAAAATGAGCGAGAGCGACATTGCCGCGCTACGCCAGCACGTCGAGCAAATCACGCCAT TGGGCTACATGGCGCAACCCGAAGAAATTGCCAGCGCGGCACTGTTTCTCGCCTCGGACGACGCCAGATACGTGAACGGC GTGGAGCTGATGGTCGATGGTGGTTTATCGCAAATCTGA
Upstream 100 bases:
>100_bases GGCCAACGTTCATTCGTGTCAGTGCCGCGCCGCTGCGATGACGCTCACCATGGGCAGGTCGTTTCAGACATTCCCTTCAT CAACGACCGAGGAGTCAGAC
Downstream 100 bases:
>100_bases AGCAGGGGATTGGTAAAGCTTCGGGCAGGCATAAGGCGACTCGTTCCATCTGCATTGACCTCAAAGCGTGGTGGTCTGCC CGTTGCGATCCAGTTCATAC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSGKFSDQVAVVTGGSTGIGFSIAQALIAEGAKRVYITARAADRLEAAVARLGDKAVAVVSDVSRQADLDALKATIQTRD DRLDAVFANAGICEKNPLGETSEAAYYAMFDVNVKGVFFSVQTLLPLMKDASSIVLTASICSSNGMEGLSLYNASKAAVR SFARTWANELKDRKIRANVLSPGFTRTPLMDNGLKMSESDIAALRQHVEQITPLGYMAQPEEIASAALFLASDDARYVNG VELMVDGGLSQI
Sequences:
>Translated_252_residues MSGKFSDQVAVVTGGSTGIGFSIAQALIAEGAKRVYITARAADRLEAAVARLGDKAVAVVSDVSRQADLDALKATIQTRD DRLDAVFANAGICEKNPLGETSEAAYYAMFDVNVKGVFFSVQTLLPLMKDASSIVLTASICSSNGMEGLSLYNASKAAVR SFARTWANELKDRKIRANVLSPGFTRTPLMDNGLKMSESDIAALRQHVEQITPLGYMAQPEEIASAALFLASDDARYVNG VELMVDGGLSQI >Mature_251_residues SGKFSDQVAVVTGGSTGIGFSIAQALIAEGAKRVYITARAADRLEAAVARLGDKAVAVVSDVSRQADLDALKATIQTRDD RLDAVFANAGICEKNPLGETSEAAYYAMFDVNVKGVFFSVQTLLPLMKDASSIVLTASICSSNGMEGLSLYNASKAAVRS FARTWANELKDRKIRANVLSPGFTRTPLMDNGLKMSESDIAALRQHVEQITPLGYMAQPEEIASAALFLASDDARYVNGV ELMVDGGLSQI
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=33.596837944664, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=30.6201550387597, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=29.0697674418605, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=34.7150259067358, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=31.3131313131313, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=30.188679245283, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=30.2788844621514, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=27.1653543307087, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=25.3846153846154, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=26.6129032258064, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=30.2040816326531, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=30.3664921465969, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=27.8884462151394, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=32.3770491803279, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=32.1285140562249, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.968253968254, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=28.6885245901639, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=26.7206477732794, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=31.640625, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=30.4, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788891, Length=234, Percent_Identity=29.4871794871795, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787820, Length=240, Percent_Identity=25, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786701, Length=202, Percent_Identity=29.2079207920792, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787545, Length=257, Percent_Identity=23.7354085603113, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=30.859375, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=32.089552238806, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=32.2834645669291, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=32.3420074349442, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=31.6981132075472, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=32.8301886792453, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=29.7397769516729, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=31.0077519379845, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=31.5589353612167, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=31.9230769230769, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.4393939393939, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=27.9527559055118, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=26.2548262548263, Blast_Score=87, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=30.4511278195489, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=30.3030303030303, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=29.7619047619048, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=31.6793893129771, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=30, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=29.811320754717, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.0566037735849, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=28.2945736434109, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=31, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=26.5384615384615, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=30.0518134715026, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=201, Percent_Identity=32.3383084577114, Blast_Score=82, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=31.4432989690722, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=268, Percent_Identity=27.2388059701493, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=173, Percent_Identity=29.4797687861272, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.5301204819277, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=32.1285140562249, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.8063241106719, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=32.1138211382114, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=30.859375, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24644337, Length=200, Percent_Identity=32.5, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=30.1204819277108, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=33.4630350194552, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17737361, Length=264, Percent_Identity=28.030303030303, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26779; Mature: 26648
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKFSDQVAVVTGGSTGIGFSIAQALIAEGAKRVYITARAADRLEAAVARLGDKAVAVV CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCHHHHHH SDVSRQADLDALKATIQTRDDRLDAVFANAGICEKNPLGETSEAAYYAMFDVNVKGVFFS HHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCEEEEEEEEEECHHHHH VQTLLPLMKDASSIVLTASICSSNGMEGLSLYNASKAAVRSFARTWANELKDRKIRANVL HHHHHHHHHCCCCEEEEEEHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCEEEHHCC SPGFTRTPLMDNGLKMSESDIAALRQHVEQITPLGYMAQPEEIASAALFLASDDARYVNG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCHHCC VELMVDGGLSQI EEEEECCCCCCC >Mature Secondary Structure SGKFSDQVAVVTGGSTGIGFSIAQALIAEGAKRVYITARAADRLEAAVARLGDKAVAVV CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCHHHHHH SDVSRQADLDALKATIQTRDDRLDAVFANAGICEKNPLGETSEAAYYAMFDVNVKGVFFS HHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCEEEEEEEEEECHHHHH VQTLLPLMKDASSIVLTASICSSNGMEGLSLYNASKAAVRSFARTWANELKDRKIRANVL HHHHHHHHHCCCCEEEEEEHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCEEEHHCC SPGFTRTPLMDNGLKMSESDIAALRQHVEQITPLGYMAQPEEIASAALFLASDDARYVNG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCHHCC VELMVDGGLSQI EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]