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The map label for this gene is ykuM [H]

Identifier: 77458950

GI number: 77458950

Start: 3141354

End: 3142205

Strand: Direct

Name: ykuM [H]

Synonym: Pfl01_2725

Alternate gene names: 77458950

Gene position: 3141354-3142205 (Clockwise)

Preceding gene: 77458949

Following gene: 77458952

Centisome position: 48.79

GC content: 64.2

Gene sequence:

>852_bases
ATGGACTGGAGTGACATGCGGATCTTCCTGGCGATTGCCCGCAACGGCTCGCTGGGCGGAGCCGCCAGGGAGTTGGGGGT
CAGTCACCCAACGGTCGGACGGCGCTTGCAGGTGCTTGAACAAACCAGTGGGCAAGCCTTTTTCCTGCGGACCGCTCAAG
GGCTGGTGCTCACGGACAGTGGCGAGAGGATTCTCGGTCTGGCGCAGGACATGGAACACAGCGCGTTGGCCATCGAGCGG
CGTCTGGCGGGGCATGGTGATCAGCCTGAAGGCCTGTTGCGGATATCCTCAGCCGACTGGTTCGCCTGTCATGTTTTGTC
GCCGGTTCTCAGCGAACTGGTGCACCGCTACCCGTTGATCGTTCCCGAAGTCATCGCCGGGCATCGACTGTTCGACCTTG
CCCGCCGGGATGCCGACATCGCTTTCCGGATCGTGCCTTTCACCGAACCCGACATCGTGCACCGCAAGCTGACAACTCTG
TCGTACGGCCTATACGCGGCTTCGCATGCCCCGACGCCGCAGCCGGACGGCGAGGGGCTTGGCCTGATCCTGATGAACAT
CGCCCAGGCCCATTACCCGGACGTGCAATGGCTGCAGCAACGCTATCCGCTGGCCCGCACCGTGTTCACCAGCAGCAGCC
GTACGGTTCAGGCACAGATGTGCGCGAAGGGGCTGGGCGTTGCCGTCTTGCCCCGCGTCCTCGGTGACTCCGTGTCGGGA
CTGCGACTGCTGGATGAGGACGAGCCACCGCCAGGGCGGGACATCTGGATGGGGTATCACCAGGACATGCGCCAGATGGA
CCGGCTGCGCGCACTGGCCGACCTTGCCTCCAGCATGATCGGTACGGGGTAG

Upstream 100 bases:

>100_bases
AGGCTGATCAGATCGGCTGATTGAATCGATATTCATGAACAGCCATCTACTTGAACTATAAGCTGATCACTCAATGTTCA
TTTTTGTACGGGGCGAGGGC

Downstream 100 bases:

>100_bases
CGCGCCTCAGGTCGGGCGTACAGCCGAGGCTTGCGCTACCGTCGCTGGCTCGCGCGCTAACGTCAGGCTTATCGCTGTCC
CTACGGCCAGGCAGACGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDSGERILGLAQDMEHSALAIER
RLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLIVPEVIAGHRLFDLARRDADIAFRIVPFTEPDIVHRKLTTL
SYGLYAASHAPTPQPDGEGLGLILMNIAQAHYPDVQWLQQRYPLARTVFTSSSRTVQAQMCAKGLGVAVLPRVLGDSVSG
LRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADLASSMIGTG

Sequences:

>Translated_283_residues
MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDSGERILGLAQDMEHSALAIER
RLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLIVPEVIAGHRLFDLARRDADIAFRIVPFTEPDIVHRKLTTL
SYGLYAASHAPTPQPDGEGLGLILMNIAQAHYPDVQWLQQRYPLARTVFTSSSRTVQAQMCAKGLGVAVLPRVLGDSVSG
LRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADLASSMIGTG
>Mature_283_residues
MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDSGERILGLAQDMEHSALAIER
RLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLIVPEVIAGHRLFDLARRDADIAFRIVPFTEPDIVHRKLTTL
SYGLYAASHAPTPQPDGEGLGLILMNIAQAHYPDVQWLQQRYPLARTVFTSSSRTVQAQMCAKGLGVAVLPRVLGDSVSG
LRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADLASSMIGTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=23.972602739726, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87081978, Length=236, Percent_Identity=29.2372881355932, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789440, Length=141, Percent_Identity=28.3687943262411, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI157672245, Length=169, Percent_Identity=28.9940828402367, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31119; Mature: 31119

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDS
CCCCCEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEECC
GERILGLAQDMEHSALAIERRLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLI
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCH
VPEVIAGHRLFDLARRDADIAFRIVPFTEPDIVHRKLTTLSYGLYAASHAPTPQPDGEGL
HHHHHHCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
GLILMNIAQAHYPDVQWLQQRYPLARTVFTSSSRTVQAQMCAKGLGVAVLPRVLGDSVSG
HHHHHHHHHHCCCCHHHHHHHCCHHHEEECCCCCEEHHHHHHCCCCHHHHHHHHCCCCCC
LRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADLASSMIGTG
CEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDS
CCCCCEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEECC
GERILGLAQDMEHSALAIERRLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLI
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCH
VPEVIAGHRLFDLARRDADIAFRIVPFTEPDIVHRKLTTLSYGLYAASHAPTPQPDGEGL
HHHHHHCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
GLILMNIAQAHYPDVQWLQQRYPLARTVFTSSSRTVQAQMCAKGLGVAVLPRVLGDSVSG
HHHHHHHHHHCCCCHHHHHHHCCHHHEEECCCCCEEHHHHHHCCCCHHHHHHHHCCCCCC
LRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADLASSMIGTG
CEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]