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The map label for this gene is yhjC [H]

Identifier: 77458661

GI number: 77458661

Start: 2789206

End: 2790219

Strand: Direct

Name: yhjC [H]

Synonym: Pfl01_2436

Alternate gene names: 77458661

Gene position: 2789206-2790219 (Clockwise)

Preceding gene: 77458655

Following gene: 77458664

Centisome position: 43.32

GC content: 63.41

Gene sequence:

>1014_bases
ATGAAGGAAAGTGCGGCTCACTGTATTGATGCTTATGGCAGCGATAAACTCGCGCCACAGCAAAGCATTTGTTCTCTGGA
GATCAAGATGAGTCGCCGATTCGATTATCTGGCCGACGTCGAAGTGTTCGTCACGGTGGTGGAGAAGGGGTCGCTGAGCG
CCGGTGCAGTGTTTCTCGGAACCACGCCGTCGGTGGTCAGCCGGGCGATTTCGCGGCTGGAGGCGCGCCTGGGTGTGCAG
TTGCTGCGGCGCACCACGCGGCGTTTGAGTCTGACCGATGCCGGTGTGTTGTATCTGGAGCAATCCCGGGCGGCGTTCGG
CCTGATCGATGATGCTGAGCGCACGATCCAGGGACAGGACGGCGAACTCAGTGGCCGCGTGCGCCTCAGCGTGCCGACCA
CTTACGGTCACTACCGTTTGCCGGCCATGCTCGCCCGATTCACCCGGCAACATCCGCAAGTGCGCGTTGAGTTGAGCATC
AGCAATCGTAATGTCGATCTGGTAGCCGAAGGCTTCGACCTGGCTATTCGGCTGGGCGCGTTGCCGGACAGCGGGCTGAT
CGGGCGCAAGCTGGAGGACGCCGGTTTATGTGTGGTGGCCGCGCCGGATTATCTGCGACGGGCCGGAACACCGCAGAGCG
TCGACGATTTGCAGCGGCATGCGTGCCTGCCGTTCGTGATGCCCAGCACCGGGCGCGTCGGGCCGTGGCTGTTCCGTGAG
CAGGGCGAAGACCGCGAATGGCTGCCCAGCGCCAATATTCAGGTGTCCGACGATGTGCTGGGGATTGTGTCGCTGGCGGA
GCAGGGGCTGGGCATCTGCCAGACCTATGACTTCATTGTCCGCGAGCGGATCGAGGGCGGGCGACTGGTGCGCCTGCTTG
AACAGTCGGGCGGGCGCTCCCGACCGTTCTCGGTGATCTACCCGCCGCACCGGCAGCTGTCGGCTTCGGCGCGGGCGCTG
ATTGATTGTTTGACCCGGGAGGTCAGTCAAGGCACTGGGGAAGGCCTCGACTGA

Upstream 100 bases:

>100_bases
AGCACCACCAGCACATTGGCCGCCTGGGCGTTCAACGCGGCAACGGAGAGAGACAGGGCGAAAGCAAGACGTGTCATTGA
GCGCATGGCGACTCCAGAAG

Downstream 100 bases:

>100_bases
CGCGATTCAAACGACGGGCAGACGCGTCACCCATTTCCCGCCACCCGCGCCGTCCTTCAGGGCGCGCAAGGCCTGGGGCA
ATTCATCGAAGTCGAACATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKESAAHCIDAYGSDKLAPQQSICSLEIKMSRRFDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQ
LLRRTTRRLSLTDAGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQVRVELSI
SNRNVDLVAEGFDLAIRLGALPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQSVDDLQRHACLPFVMPSTGRVGPWLFRE
QGEDREWLPSANIQVSDDVLGIVSLAEQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYPPHRQLSASARAL
IDCLTREVSQGTGEGLD

Sequences:

>Translated_337_residues
MKESAAHCIDAYGSDKLAPQQSICSLEIKMSRRFDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQ
LLRRTTRRLSLTDAGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQVRVELSI
SNRNVDLVAEGFDLAIRLGALPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQSVDDLQRHACLPFVMPSTGRVGPWLFRE
QGEDREWLPSANIQVSDDVLGIVSLAEQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYPPHRQLSASARAL
IDCLTREVSQGTGEGLD
>Mature_337_residues
MKESAAHCIDAYGSDKLAPQQSICSLEIKMSRRFDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQ
LLRRTTRRLSLTDAGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQVRVELSI
SNRNVDLVAEGFDLAIRLGALPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQSVDDLQRHACLPFVMPSTGRVGPWLFRE
QGEDREWLPSANIQVSDDVLGIVSLAEQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYPPHRQLSASARAL
IDCLTREVSQGTGEGLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=34.0136054421769, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=34.5637583892617, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=31.0104529616725, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=29.757785467128, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=31.5068493150685, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789440, Length=276, Percent_Identity=27.536231884058, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=28.0405405405405, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=26.6666666666667, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788706, Length=182, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=264, Percent_Identity=27.6515151515151, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=285, Percent_Identity=23.5087719298246, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=26.865671641791, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787806, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=153, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082132, Length=287, Percent_Identity=25.0871080139373, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=153, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790208, Length=284, Percent_Identity=25.7042253521127, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36964; Mature: 36964

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKESAAHCIDAYGSDKLAPQQSICSLEIKMSRRFDYLADVEVFVTVVEKGSLSAGAVFLG
CCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHEEEEECCCCCCCCEEEEC
TTPSVVSRAISRLEARLGVQLLRRTTRRLSLTDAGVLYLEQSRAAFGLIDDAERTIQGQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEECEECCHHHHHCCCC
GELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQVRVELSISNRNVDLVAEGFDLAIRLGA
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCEEEEEECC
LPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQSVDDLQRHACLPFVMPSTGRVGPWLFRE
CCCCCCCCCEECCCCEEEEECCHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHC
QGEDREWLPSANIQVSDDVLGIVSLAEQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRS
CCCCCCCCCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCC
RPFSVIYPPHRQLSASARALIDCLTREVSQGTGEGLD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKESAAHCIDAYGSDKLAPQQSICSLEIKMSRRFDYLADVEVFVTVVEKGSLSAGAVFLG
CCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHEEEEECCCCCCCCEEEEC
TTPSVVSRAISRLEARLGVQLLRRTTRRLSLTDAGVLYLEQSRAAFGLIDDAERTIQGQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEECEECCHHHHHCCCC
GELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQVRVELSISNRNVDLVAEGFDLAIRLGA
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCEEEEEECC
LPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQSVDDLQRHACLPFVMPSTGRVGPWLFRE
CCCCCCCCCEECCCCEEEEECCHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHC
QGEDREWLPSANIQVSDDVLGIVSLAEQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRS
CCCCCCCCCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCC
RPFSVIYPPHRQLSASARALIDCLTREVSQGTGEGLD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]