| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ykvO [H]
Identifier: 77458664
GI number: 77458664
Start: 2792396
End: 2793145
Strand: Direct
Name: ykvO [H]
Synonym: Pfl01_2439
Alternate gene names: 77458664
Gene position: 2792396-2793145 (Clockwise)
Preceding gene: 77458661
Following gene: 77458668
Centisome position: 43.37
GC content: 64.13
Gene sequence:
>750_bases ATGAGCAACAGACTTGAAGGCAAAATCGCACTGATCACTGGCGGCACCACCGGCATCGGCCTGGCTTCGGCGCAGGAATT CGTCGCCCAGGGCGCCACGGTATTCATCACCGGCCGCCGTCAGGCCGAACTGGACAAAGCGGTCGCCGCCATCGGCCCAC GGGCCATCGGCATTCAGGGCGATGTGGCGAAGCTGGAGGATCTGGATCGCATCTACAGCGAGATTTCCGCCAAGGCCGGG CACCTCGACATCCTGTTCGCCAACGCCGGCGGCGGGGACATGCTGCCGCTGGGCTCGATCACTGAAGAGCACTTCGACCG GATTTTCGACGCCAACGTGAAGGGCACGCTGTTCACCGTACAGAAGGCCTTGCCGCTGCTGCGCGATGGCGCCTCGATTC TGCTGACCTCGTCGACCACGTCGGTGCAGGGCACGGAGAACTTCAGCGTCTACAGCGCGAGTAAAGCGGCGGTGCGCAAC TTCGCCCGCTCATGGTTGCTGGACCTGAAACCACGGCGTATCCGCGTCAACGCCATCAGCCCTGGCCCGGTGCGCACGCC AGGGCTGGCAGGGCTGGTGCCGGCGGAACACACCCAGGGGCTGTTCGATCAACTGGCGTCTATCGTGCCGATCGGGCGTC TGGGCGAGCCGAGCGAGATTGCCAAGGCCGCGCTGTTCTTGGCCTCGGATGACAGCAGCTTCGTCAATGGCATCGAGTTG TTCGTCGACGGCGGTACTGCGCAGATCTGA
Upstream 100 bases:
>100_bases ATTTTGCGGATTTTTCAATTCAATCGATCGGCCTAAAGTCGCTTCCAACGGCTCACCTACGACCCGTCACCTACCTCGAA ACGGTTACTGGAGATTCATC
Downstream 100 bases:
>100_bases TTTAAACCGCTTGATGCCCCGGCACTTGTTCAGTCGAGTGCCGGGGTTCTTCCGTTTCTTCGTCCGGCGCGTTATCCCAG ATCAGGCGCGGGTCGAAACT
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MSNRLEGKIALITGGTTGIGLASAQEFVAQGATVFITGRRQAELDKAVAAIGPRAIGIQGDVAKLEDLDRIYSEISAKAG HLDILFANAGGGDMLPLGSITEEHFDRIFDANVKGTLFTVQKALPLLRDGASILLTSSTTSVQGTENFSVYSASKAAVRN FARSWLLDLKPRRIRVNAISPGPVRTPGLAGLVPAEHTQGLFDQLASIVPIGRLGEPSEIAKAALFLASDDSSFVNGIEL FVDGGTAQI
Sequences:
>Translated_249_residues MSNRLEGKIALITGGTTGIGLASAQEFVAQGATVFITGRRQAELDKAVAAIGPRAIGIQGDVAKLEDLDRIYSEISAKAG HLDILFANAGGGDMLPLGSITEEHFDRIFDANVKGTLFTVQKALPLLRDGASILLTSSTTSVQGTENFSVYSASKAAVRN FARSWLLDLKPRRIRVNAISPGPVRTPGLAGLVPAEHTQGLFDQLASIVPIGRLGEPSEIAKAALFLASDDSSFVNGIEL FVDGGTAQI >Mature_248_residues SNRLEGKIALITGGTTGIGLASAQEFVAQGATVFITGRRQAELDKAVAAIGPRAIGIQGDVAKLEDLDRIYSEISAKAGH LDILFANAGGGDMLPLGSITEEHFDRIFDANVKGTLFTVQKALPLLRDGASILLTSSTTSVQGTENFSVYSASKAAVRNF ARSWLLDLKPRRIRVNAISPGPVRTPGLAGLVPAEHTQGLFDQLASIVPIGRLGEPSEIAKAALFLASDDSSFVNGIELF VDGGTAQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=32.258064516129, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=31.2252964426877, Blast_Score=114, Evalue=6e-26, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=30.6772908366534, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=31.8367346938775, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=31.3492063492063, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=34.7826086956522, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=30.7053941908714, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=29.3436293436293, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=30.9236947791165, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=32.5966850828729, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=27.3809523809524, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=32.0158102766798, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=28.2352941176471, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=26.0204081632653, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=26.7206477732794, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=34, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=30.2788844621514, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=33.6, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=31.0204081632653, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=30.241935483871, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=31.1740890688259, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=30.7053941908714, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=30.9236947791165, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=30.0411522633745, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=29.2, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=31.8435754189944, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=31.7460317460317, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787545, Length=251, Percent_Identity=25.4980079681275, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788891, Length=236, Percent_Identity=24.5762711864407, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.2205323193916, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=28.8973384030418, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=30.6772908366534, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=34.4827586206897, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=34.0996168582375, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=32.3076923076923, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=31.3253012048193, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=30.7984790874525, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=30.3846153846154, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=30.6451612903226, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=35.8267716535433, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=29.5019157088123, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.5660377358491, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.8270676691729, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=30.8, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=30.859375, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.188679245283, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=29.2307692307692, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=29.6577946768061, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.1368821292776, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=31.0344827586207, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=31.9838056680162, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=29.811320754717, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=29.5019157088123, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.4511278195489, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=30.4, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.3149606299213, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=28.4584980237154, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=27.2251308900524, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=26.3565891472868, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=28.3464566929134, Blast_Score=90, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322067, Length=180, Percent_Identity=31.1111111111111, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=34.5238095238095, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=36.144578313253, Blast_Score=127, Evalue=5e-30, Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=33.469387755102, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.8178137651822, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=33.0645161290323, Blast_Score=117, Evalue=5e-27, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.0080971659919, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=35.4838709677419, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=31.4741035856574, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=28.6274509803922, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24640492, Length=215, Percent_Identity=26.046511627907, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI281364892, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26115; Mature: 25984
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRLEGKIALITGGTTGIGLASAQEFVAQGATVFITGRRQAELDKAVAAIGPRAIGIQG CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEECCCC DVAKLEDLDRIYSEISAKAGHLDILFANAGGGDMLPLGSITEEHFDRIFDANVKGTLFTV CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEH QKALPLLRDGASILLTSSTTSVQGTENFSVYSASKAAVRNFARSWLLDLKPRRIRVNAIS HHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEC PGPVRTPGLAGLVPAEHTQGLFDQLASIVPIGRLGEPSEIAKAALFLASDDSSFVNGIEL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCHHCEEEE FVDGGTAQI EEECCCCCC >Mature Secondary Structure SNRLEGKIALITGGTTGIGLASAQEFVAQGATVFITGRRQAELDKAVAAIGPRAIGIQG CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEECCCC DVAKLEDLDRIYSEISAKAGHLDILFANAGGGDMLPLGSITEEHFDRIFDANVKGTLFTV CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEH QKALPLLRDGASILLTSSTTSVQGTENFSVYSASKAAVRNFARSWLLDLKPRRIRVNAIS HHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEC PGPVRTPGLAGLVPAEHTQGLFDQLASIVPIGRLGEPSEIAKAALFLASDDSSFVNGIEL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCHHCEEEE FVDGGTAQI EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]