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The map label for this gene is ydcN [C]

Identifier: 77457536

GI number: 77457536

Start: 1483903

End: 1484445

Strand: Direct

Name: ydcN [C]

Synonym: Pfl01_1309

Alternate gene names: 77457536

Gene position: 1483903-1484445 (Clockwise)

Preceding gene: 77457533

Following gene: 77457538

Centisome position: 23.05

GC content: 58.93

Gene sequence:

>543_bases
ATGTCTATCCGTTTGAAATTATTGAGAAAAAAACTTGGCGTAACCCTTGAGGCACTGGCCGAGAAATCCGGCATGACCAA
GAGTTATCTGTCGAAGGTCGAGCGCGGGTTGAACACACCGTCGATTGCCGCCGCGCTGAAACTGGCCAAGGCGCTGAACG
TGAAAGTCGAGGAGCTGTTCTCCGAAGACAACGTCAGCCTCGACGGCTACAGCCTGGTGCGCAGCCACGAACGCCAGTCG
CTGGCGGCCAACGACCACAGCCCTGGCTACGCGGTGCTGGCCCATCAGGTCAGCGAACGCAGCCTGCTGCCGTTCATCAT
TTATCCGCCGAGCGAATTCACCGACAAAACCTTCAAGGAACATTTGGGCGAGGAGTTTCTGTTCGTCCACGAGGGCCGGG
TCGAAGTCGACTTCGTGAACGAACGGGTGCTGCTGGAGCGGGGCGATGCGCTGCACTTCAATGCGCAGAAGCCGCATCGC
ATCCGCTCAGTGGGCGAAGTGCAGGCGCAGTTGCTGGTGGTGGTGCACAGCAGCGAGGAGTGA

Upstream 100 bases:

>100_bases
CCTGTGGTGGTTGCCATGGATGACACTTATGAGGCTATATGACACTTTGTGTCATTGGCAAGGACAAATCGTCTTTCCTT
TGCTGGATTAATCGCTTCGC

Downstream 100 bases:

>100_bases
TCAGATCTCGACCGGTACCGACAGCTTCGGATGGCCCAGCGCATGGCTCTTGGAATCAAAGAACCGCAACTCGACGCCCG
TGCCCTCGAACAGCTTCGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Cupin 2 Barrel Domain-Containing Protein; MerR Family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; Cupin Domain Protein; Transcriptional Regulatory Protein; Epoxidase; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein; Transcription Regulator; XRE Family-Like Protein

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSIRLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELFSEDNVSLDGYSLVRSHERQS
LAANDHSPGYAVLAHQVSERSLLPFIIYPPSEFTDKTFKEHLGEEFLFVHEGRVEVDFVNERVLLERGDALHFNAQKPHR
IRSVGEVQAQLLVVVHSSEE

Sequences:

>Translated_180_residues
MSIRLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELFSEDNVSLDGYSLVRSHERQS
LAANDHSPGYAVLAHQVSERSLLPFIIYPPSEFTDKTFKEHLGEEFLFVHEGRVEVDFVNERVLLERGDALHFNAQKPHR
IRSVGEVQAQLLVVVHSSEE
>Mature_179_residues
SIRLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELFSEDNVSLDGYSLVRSHERQSL
AANDHSPGYAVLAHQVSERSLLPFIIYPPSEFTDKTFKEHLGEEFLFVHEGRVEVDFVNERVLLERGDALHFNAQKPHRI
RSVGEVQAQLLVVVHSSEE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20189; Mature: 20058

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF
CCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHH
SEDNVSLDGYSLVRSHERQSLAANDHSPGYAVLAHQVSERSLLPFIIYPPSEFTDKTFKE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEEHHCCCCCCCEEEECCCCCCHHHHHH
HLGEEFLFVHEGRVEVDFVNERVLLERGDALHFNAQKPHRIRSVGEVQAQLLVVVHSSEE
HCCCCEEEEECCEEEEEECCCEEEEECCCEEEECCCCCHHHHHHHHHHEEEEEEEECCCC
>Mature Secondary Structure 
SIRLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF
CHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHH
SEDNVSLDGYSLVRSHERQSLAANDHSPGYAVLAHQVSERSLLPFIIYPPSEFTDKTFKE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEEHHCCCCCCCEEEECCCCCCHHHHHH
HLGEEFLFVHEGRVEVDFVNERVLLERGDALHFNAQKPHRIRSVGEVQAQLLVVVHSSEE
HCCCCEEEEECCEEEEEECCCEEEEECCCEEEECCCCCHHHHHHHHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA