| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is dinG [H]
Identifier: 77457452
GI number: 77457452
Start: 1394936
End: 1397080
Strand: Direct
Name: dinG [H]
Synonym: Pfl01_1225
Alternate gene names: 77457452
Gene position: 1394936-1397080 (Clockwise)
Preceding gene: 77457450
Following gene: 77457453
Centisome position: 21.67
GC content: 63.5
Gene sequence:
>2145_bases ATGATCAGCACTGAACTCAAAACCACGATCCAGGGCGCCTACTCGCGTTTTCTAGAGGCCAAGAGCCTCAAGCCGCGTTA CGGCCAGCGCCTGATGATCGCTGAAGTCGCCAAGGTCCTCGGTGATATCGACACCGACGACGAAGGCCGGCGCAGTGGCG ACCCCGCGATTGTCGCGGTGGAAGCCGGCACCGGTACCGGCAAGACCGTGGCCTACAGCCTGGCGGCGATCCCGACCGCC AAACTGGCCGGCAAACGCCTGGTGATCGCCACCGCCACCGTCGCCCTGCAAGAGCAGATCGTCTACAAGGATTTGCCCGA CCTGATGCGCAACAGCGGGCTGAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTACATGTGCCTGTCCAAGCTCG ACATGCTGTTGCAGGAAGGCCATGCGCAGACCGCCACCGCGCAGCTGTTCGAAGAAGAAGGCTTCAAGATCGAGGTCGAT GAGGCCAGCCAGAAGCTGTTCACCAGCATGATCGAGAAGCTCGCCGGCAATAAATGGGACGGCGACCGTGACAGTTGGCC CAACGCGCTGGAAGACGCCGACTGGGCGCGCCTGACCACCGATCACAGCCAGTGCACCAACCGTCATTGCCCGAATTTCG GCCAGTGCGCCTTCTATAAGGCCCGCGAAGGCATGGGCAAGGTCGACGTGATCGTCACCAACCACGACATGGTGCTGGCC GACCTGGCGCTGGGTGGCGGGGCCGTGTTGCCGGATCCGCGCGACACCATTTATGTGTTCGACGAAGGCCACCACCTGCC GGACAAGGCCATCGGCCACTTCGCTCATTACACGCGCCTGCGTTCCACTGCCGACTGGCTGGAAACCACCGCCAAGAACC TCACCAAACTGCTGGCCCAGCACCCGTTGCCGGGCGACCTCGGCAAGCTGATCGAGCAGGTGCCGGAGCTGGCGCGGGAG ATCAAGACCCAGCAGCAGTTCATGTTTACCGCCTGCGAGCAGGTCGCCGATTTCAAGCCCGGCGAAGACGTCGAAGGCCG CGAGCGCCCGCGTCATCGCTTCATCGGCGGGGTGATTCCGGAACACATGCGCGAGATGGGCATCGAGCTGAAAAAAGGCT TCGCCCGCCTCAATGACCTGTTTACCCGCCTGACCGATCTGCTCAAGGAAAGCATGGACGGCGAGGTCAACATCGGTATC GCCAGCAATCAGGCCGAAGAATGGTATCCACTGTTCGGCAGCCTGTTGTCCCGTGCTTCCGGCAACTGGGAGCTGTGGAC CGCGTTCACCGCCGAAGACCCCGAAGACAACCCGCCGATGGCCCGCTGGCTGACCCTGGCCGAAAGCGGTTCGCTGTTCG ACATCGAGGTCAACGCCAGCCCGATCCTTGCCGCCGAAACCCTGCGCCGCAGCCTGTGGAACGTGGCCTATGGCTGTCTG GTGACCTCGGCGACCTTGACCGCACTCGGCACCTTCGACCGTTTCCGCATGCGTGCCGGTCTGCCGAAAAAAGCCGTCAC CGCCGTGGTGCCGAGTCCGTTCCATCACGCCGATGCCGGTGTGTTGCGGGTGCCGGACCTGAAGGCCGATCCGCGCGACG CCGCCGCCCACACCGCCGCGATCATCCGTGATCTGCCGGAACTGGTCGAAGGCTCGCGCGGCAGTCTGGTGCTGTTCTCG TCGCGCAAACAGATGCAGGACGTGTTCGACGGCCTCGACCGCGACTGGCGCAAGCAAGTGTTCATTCAAGGCAACCTGTC GAAACAGGAAACCCTGAACAAGCACAAGGCGCGGGTCGATGGCGGCGATTCCAGCGTGCTGTTCGGCCTCGCCAGTTTTG CCGAAGGCGTGGACTTGCCGGGCGCCTACTGCGAGCACGTGGTGATCGCCAAGATCCCGTTCTCGGTGCCGGACGATCCG GTCGAAGCCGCACTGTCGGAATGGATCGAAGCCCGGGGCGGCAATCCGTTCATGGAAATCTCGGTGCCCGACGCCTCGCT GAAGCTGGTCCAGGCCTGCGGCCGTCTGCTGCGCACCGAAGAAGACCGCGGCACCATCACCTTGCTGGATCGGCGGCTGG TCACCCAGCGCTACGGCAAGGCGATCCTCAATGCGTTGCCTCCTTTCCGTCGTGAAATATCCTGA
Upstream 100 bases:
>100_bases TTGGGGTACTCCGATCTGCGCAGGATTGATTCGCGGGGTATGATAGCCCCCCATCCGAACCACTGAAAATTTATCCAGCG TTTTTTGCGCCCGACATTCA
Downstream 100 bases:
>100_bases GACATCGGTGGGCAGTTTTGCCCGCCGCGCTGTCTATCTCTCTGTCACTGCTTTTCCATTGGCCCTTGCGGGTCGTTAGG GAGAATTCCGTTCTCATGAT
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 714; Mature: 714
Protein sequence:
>714_residues MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGRRSGDPAIVAVEAGTGTGKTVAYSLAAIPTA KLAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFSFALAKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVD EASQKLFTSMIEKLAGNKWDGDRDSWPNALEDADWARLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLA DLALGGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQHPLPGDLGKLIEQVPELARE IKTQQQFMFTACEQVADFKPGEDVEGRERPRHRFIGGVIPEHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGI ASNQAEEWYPLFGSLLSRASGNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAAETLRRSLWNVAYGCL VTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAAIIRDLPELVEGSRGSLVLFS SRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVDGGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDP VEAALSEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRREIS
Sequences:
>Translated_714_residues MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGRRSGDPAIVAVEAGTGTGKTVAYSLAAIPTA KLAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFSFALAKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVD EASQKLFTSMIEKLAGNKWDGDRDSWPNALEDADWARLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLA DLALGGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQHPLPGDLGKLIEQVPELARE IKTQQQFMFTACEQVADFKPGEDVEGRERPRHRFIGGVIPEHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGI ASNQAEEWYPLFGSLLSRASGNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAAETLRRSLWNVAYGCL VTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAAIIRDLPELVEGSRGSLVLFS SRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVDGGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDP VEAALSEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRREIS >Mature_714_residues MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGRRSGDPAIVAVEAGTGTGKTVAYSLAAIPTA KLAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFSFALAKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVD EASQKLFTSMIEKLAGNKWDGDRDSWPNALEDADWARLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLA DLALGGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQHPLPGDLGKLIEQVPELARE IKTQQQFMFTACEQVADFKPGEDVEGRERPRHRFIGGVIPEHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGI ASNQAEEWYPLFGSLLSRASGNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAAETLRRSLWNVAYGCL VTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAAIIRDLPELVEGSRGSLVLFS SRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVDGGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDP VEAALSEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRREIS
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=731, Percent_Identity=32.6949384404925, Blast_Score=320, Evalue=2e-88, Organism=Escherichia coli, GI1788110, Length=700, Percent_Identity=28.4285714285714, Blast_Score=219, Evalue=6e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 78845; Mature: 78845
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGRRSGDPAIVAV CCCCHHHHHHHHHHHHHHHHHCCCCHHCCEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEE EAGTGTGKTVAYSLAAIPTAKLAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFSFAL ECCCCCCCHHEEHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE AKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVDEASQKLFTSMIEKLAGNKWD ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCC GDRDSWPNALEDADWARLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLA CCCCCCCCHHCCCCHHHCCCCHHHHHCCCCCCCCCEEHHHHHCCCCCEEEEEECCCEEEE DLALGGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQ EHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPLPGDLGKLIEQVPELAREIKTQQQFMFTACEQVADFKPGEDVEGRERPRHRFIGGVIP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCH EHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGIASNQAEEWYPLFGSLLSRAS HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC GNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAAETLRRSLWNVAYGCL CCEEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH VTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAA HHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHH IIRDLPELVEGSRGSLVLFSSRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVD HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHHCC GGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDPVEAALSEWIEARGGNPFMEI CCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE SVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRREIS ECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGRRSGDPAIVAV CCCCHHHHHHHHHHHHHHHHHCCCCHHCCEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEE EAGTGTGKTVAYSLAAIPTAKLAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFSFAL ECCCCCCCHHEEHHHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE AKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVDEASQKLFTSMIEKLAGNKWD ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCC GDRDSWPNALEDADWARLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLA CCCCCCCCHHCCCCHHHCCCCHHHHHCCCCCCCCCEEHHHHHCCCCCEEEEEECCCEEEE DLALGGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQ EHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPLPGDLGKLIEQVPELAREIKTQQQFMFTACEQVADFKPGEDVEGRERPRHRFIGGVIP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCH EHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGIASNQAEEWYPLFGSLLSRAS HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC GNWELWTAFTAEDPEDNPPMARWLTLAESGSLFDIEVNASPILAAETLRRSLWNVAYGCL CCEEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH VTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAA HHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHH IIRDLPELVEGSRGSLVLFSSRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVD HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHHCC GGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDPVEAALSEWIEARGGNPFMEI CCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE SVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRREIS ECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]