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The map label for this gene is agaB [H]

Identifier: 77457453

GI number: 77457453

Start: 1397176

End: 1399656

Strand: Direct

Name: agaB [H]

Synonym: Pfl01_1226

Alternate gene names: 77457453

Gene position: 1397176-1399656 (Clockwise)

Preceding gene: 77457452

Following gene: 77457454

Centisome position: 21.7

GC content: 63.36

Gene sequence:

>2481_bases
ATGATTCGTCGTTCGTTGCCTGCCGTTTTTGCCCTGGTTTTCGCTGCGCCTTTATTCGCGGCACCTGCCGGCCAGCAGAC
CCTGTTCAACTTTGTCCGCCCCGCCGATGTGGTGAAAGTGGCGACCGAAAACGCCGACCTGCCGCAAGCCAACGCCGAGC
AGACCCCCGAAGGCGAAGTGCTGCGCCGGGTGACGTTCAACCCGACGGCCCGCCCGACCCTGCGTCTGTCCCCGCAGACT
GGCGCCTGGGACTGGTCGCAGTCCGGCATGATGAGCCTGCGCATCCAGAGCGCGATGAACTGGGCCGTGACCGTCTACGT
ACAAATCCAGAGCAATGACGGCAAGACCTTGGTCAGCCGCGTTGACCTGCCGGCCGGCCCGGCGCAGACCTTGCTCGTGC
CGTTGACCGCGACCTCGCCACTGAGCCAGGGCATGAAAGCCGGGCCGGCGATGCCGATGATGATCGACGGGCAGCGCATC
CTGCTGGCGAGCAGCAGCGGTGAGCTGGATCGCAGCCAGGTGGTGTCGGTCAGCCTGTCGATGGATCAGCCGAAAGCCGC
GCAAAGTCTGTTGCTCGAGCGCTTTGGCGTGCAGGACGAAGGCGAAGTGATCAAATCTGCCTACGGCAATCTGGTGGACG
CCTATGGCCAGTCGACTCGCGGCAAGTGGCCGGAGAAAGTCGCCAATGACGAACAACTGAAATCCGCCGCCGCCAAAGAA
CAGCAACAACTGAGCACCTGGCTGGCCGAGCGCGAAAAGTCCTCGCTGGACAAGTTCGGTGGCTGGAGCAAAGGCCCGGC
GTTCAAGGCCAGCGGTTTCTTCCGCACCGAGAAACGTGACGGCCGCTGGTATCTGGTGACGCCCGAGGGCCATCCGTTCT
ATTCCCTGGGCGTGAACACCGTCAGCCCGGAGGTCAACCAGACCTACGTGGCCGGCCGCGAATACATGTTCGAATCCCTG
CCCAAACCGGAAGAGCCACTGGCCAGCCACTTCGGCGAAGGTGACAACCGTGGTGGCAACGGTGTCGATCAAGGCCGTGG
CTACAACTTCGGGCGCTGGTACGACTTCTACGGCGCCAACCTTCAGCGCCTTTATGGCGAGCCATGCATCCCGGATAGCG
GCAACAAGGCCGGTGTCGCCGAAGCCGCCAAGGCTGGCGCCGCCGAAGAGGCGGCAACCAACGCCAGTGCACCGGTAGCC
GCCTCCGAACAGCCGAAAGCCGGGGTCGCCGAATCTGCAGCCACCAGCGGGCAAAGTGTCGCGACGCAGTGCAAAAACAC
GGTCGACGAGCAAAAGTGGGCCAGCCACACCCTTGATCGCCTTCAAGCCTGGGGCTTCAACACCATCGGTAACTGGAGCG
CCCCCGCCCTCAGTGACGCCGAGCGCATGCCGTACACCTTGCCGCTGTCGATTGTCGGCGATTACACCAGCATCAGCACC
GGTACCGACTGGTGGGGCGGCATGCCTGATCCGTTCGATCCGCGTTTTGCCATGGCCACCGAGCGCGCCGTAGCGATTGC
CGCCCGCGATCATCGCGATGATCCGTGGCTGATCGGCTACTTCGCCGATAACGAGCTGGCCTGGGCGGGTCCCGGTGATG
ACCCGAAATCCCGTTACGCGCTGGCCTACGGCACCTTGAAAATGACCACTGACGTTCCGGCCAAGCGCGCGTTCCTCAAG
CAGTTGCGCGACAAGTACCGCAATCAGGCGGGTCTGTCGAAAGCCTGGGGCATTGATCTGCCGGCGTGGGAGTTGATGGA
AGACCCGGGTTTCGAGGCGCCGCTGCCGAATCCGGAGCATCCGGAAATCGAGGCCGACTTCAAATACTTCCAGAAGGTCT
TCGCCGATACCTACTTCAAGACCATTTCCGACTCGCTGAAATGGCACGCGCCGAACCAGTTGCTGCTCGGCGGCCGTTTC
GCCACCAGCACCCCGGAAGCCGTGGCGTCCTGCGCCCAGTATTGCGACGTGCTGAGCTTCAACATGTACACCCTGCAACC
GCAGGACGGCTATGACTTCGCCGCGCTGCACAACCTCGACAAACCGGTGCTGATCACCGAATTCAACTTCGGCTCCACCG
ACCGTGGCCCGTTCTGGGGCGGCGTGACCCCGTTGAGCAAGGAAGAAGACCGCGGCCCGGCCTACGCCAACTTCCTCAAG
CAGGCCCTGAGCGAACCGTCGATTGTCGGCGTGCACTGGTTCCAGTATCTGGACCAACCGGTGACCGGGCGCCTGCTCGA
TGGCGAGAACGGTCACTTTGGTCTGGTCGGGGTCACTGATCTGCCGTTTCAGGGCTTTGTCGAAACGGTGCGCAAAAGCA
ACCTGGCGACCGTCGATCAGTTGAGCAAAGAGGCGCAGAAAGCGGCTGCCGCAGCGGACAAGGCCGGCCACGAAACCGAA
GGCGCCCGCAAGGCTGACGCCGTCAAAGGCCCGGGGCAGGGCGCAGGCCATACAGGCGGGCATTCCGGCAACGGCCACTG
A

Upstream 100 bases:

>100_bases
CCTGAGACATCGGTGGGCAGTTTTGCCCGCCGCGCTGTCTATCTCTCTGTCACTGCTTTTCCATTGGCCCTTGCGGGTCG
TTAGGGAGAATTCCGTTCTC

Downstream 100 bases:

>100_bases
TCATTACAAAACCTGAAGACCGCCCGGCCCGCAGCGGTTCCCAAAACCCTCTCGGGCTGGAACAATGCGGGCCACTTTGT
AGAGCGTTTTCGCGGGGGAG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 826; Mature: 826

Protein sequence:

>826_residues
MIRRSLPAVFALVFAAPLFAAPAGQQTLFNFVRPADVVKVATENADLPQANAEQTPEGEVLRRVTFNPTARPTLRLSPQT
GAWDWSQSGMMSLRIQSAMNWAVTVYVQIQSNDGKTLVSRVDLPAGPAQTLLVPLTATSPLSQGMKAGPAMPMMIDGQRI
LLASSSGELDRSQVVSVSLSMDQPKAAQSLLLERFGVQDEGEVIKSAYGNLVDAYGQSTRGKWPEKVANDEQLKSAAAKE
QQQLSTWLAEREKSSLDKFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNTVSPEVNQTYVAGREYMFESL
PKPEEPLASHFGEGDNRGGNGVDQGRGYNFGRWYDFYGANLQRLYGEPCIPDSGNKAGVAEAAKAGAAEEAATNASAPVA
ASEQPKAGVAESAATSGQSVATQCKNTVDEQKWASHTLDRLQAWGFNTIGNWSAPALSDAERMPYTLPLSIVGDYTSIST
GTDWWGGMPDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAGPGDDPKSRYALAYGTLKMTTDVPAKRAFLK
QLRDKYRNQAGLSKAWGIDLPAWELMEDPGFEAPLPNPEHPEIEADFKYFQKVFADTYFKTISDSLKWHAPNQLLLGGRF
ATSTPEAVASCAQYCDVLSFNMYTLQPQDGYDFAALHNLDKPVLITEFNFGSTDRGPFWGGVTPLSKEEDRGPAYANFLK
QALSEPSIVGVHWFQYLDQPVTGRLLDGENGHFGLVGVTDLPFQGFVETVRKSNLATVDQLSKEAQKAAAAADKAGHETE
GARKADAVKGPGQGAGHTGGHSGNGH

Sequences:

>Translated_826_residues
MIRRSLPAVFALVFAAPLFAAPAGQQTLFNFVRPADVVKVATENADLPQANAEQTPEGEVLRRVTFNPTARPTLRLSPQT
GAWDWSQSGMMSLRIQSAMNWAVTVYVQIQSNDGKTLVSRVDLPAGPAQTLLVPLTATSPLSQGMKAGPAMPMMIDGQRI
LLASSSGELDRSQVVSVSLSMDQPKAAQSLLLERFGVQDEGEVIKSAYGNLVDAYGQSTRGKWPEKVANDEQLKSAAAKE
QQQLSTWLAEREKSSLDKFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNTVSPEVNQTYVAGREYMFESL
PKPEEPLASHFGEGDNRGGNGVDQGRGYNFGRWYDFYGANLQRLYGEPCIPDSGNKAGVAEAAKAGAAEEAATNASAPVA
ASEQPKAGVAESAATSGQSVATQCKNTVDEQKWASHTLDRLQAWGFNTIGNWSAPALSDAERMPYTLPLSIVGDYTSIST
GTDWWGGMPDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAGPGDDPKSRYALAYGTLKMTTDVPAKRAFLK
QLRDKYRNQAGLSKAWGIDLPAWELMEDPGFEAPLPNPEHPEIEADFKYFQKVFADTYFKTISDSLKWHAPNQLLLGGRF
ATSTPEAVASCAQYCDVLSFNMYTLQPQDGYDFAALHNLDKPVLITEFNFGSTDRGPFWGGVTPLSKEEDRGPAYANFLK
QALSEPSIVGVHWFQYLDQPVTGRLLDGENGHFGLVGVTDLPFQGFVETVRKSNLATVDQLSKEAQKAAAAADKAGHETE
GARKADAVKGPGQGAGHTGGHSGNGH
>Mature_826_residues
MIRRSLPAVFALVFAAPLFAAPAGQQTLFNFVRPADVVKVATENADLPQANAEQTPEGEVLRRVTFNPTARPTLRLSPQT
GAWDWSQSGMMSLRIQSAMNWAVTVYVQIQSNDGKTLVSRVDLPAGPAQTLLVPLTATSPLSQGMKAGPAMPMMIDGQRI
LLASSSGELDRSQVVSVSLSMDQPKAAQSLLLERFGVQDEGEVIKSAYGNLVDAYGQSTRGKWPEKVANDEQLKSAAAKE
QQQLSTWLAEREKSSLDKFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNTVSPEVNQTYVAGREYMFESL
PKPEEPLASHFGEGDNRGGNGVDQGRGYNFGRWYDFYGANLQRLYGEPCIPDSGNKAGVAEAAKAGAAEEAATNASAPVA
ASEQPKAGVAESAATSGQSVATQCKNTVDEQKWASHTLDRLQAWGFNTIGNWSAPALSDAERMPYTLPLSIVGDYTSIST
GTDWWGGMPDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAGPGDDPKSRYALAYGTLKMTTDVPAKRAFLK
QLRDKYRNQAGLSKAWGIDLPAWELMEDPGFEAPLPNPEHPEIEADFKYFQKVFADTYFKTISDSLKWHAPNQLLLGGRF
ATSTPEAVASCAQYCDVLSFNMYTLQPQDGYDFAALHNLDKPVLITEFNFGSTDRGPFWGGVTPLSKEEDRGPAYANFLK
QALSEPSIVGVHWFQYLDQPVTGRLLDGENGHFGLVGVTDLPFQGFVETVRKSNLATVDQLSKEAQKAAAAADKAGHETE
GARKADAVKGPGQGAGHTGGHSGNGH

Specific function: Hydrolyzes agarose to yield predominantly neoagarotetraose and neoagarohexaose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 50 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42 [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 89649; Mature: 89649

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRSLPAVFALVFAAPLFAAPAGQQTLFNFVRPADVVKVATENADLPQANAEQTPEGEV
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCHHH
LRRVTFNPTARPTLRLSPQTGAWDWSQSGMMSLRIQSAMNWAVTVYVQIQSNDGKTLVSR
EEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHCCCEEEEEEEEEECCCCCEEEEE
VDLPAGPAQTLLVPLTATSPLSQGMKAGPAMPMMIDGQRILLASSSGELDRSQVVSVSLS
CCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEC
MDQPKAAQSLLLERFGVQDEGEVIKSAYGNLVDAYGQSTRGKWPEKVANDEQLKSAAAKE
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHH
QQQLSTWLAEREKSSLDKFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEECCCC
VSPEVNQTYVAGREYMFESLPKPEEPLASHFGEGDNRGGNGVDQGRGYNFGRWYDFYGAN
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHCCCC
LQRLYGEPCIPDSGNKAGVAEAAKAGAAEEAATNASAPVAASEQPKAGVAESAATSGQSV
HHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHH
ATQCKNTVDEQKWASHTLDRLQAWGFNTIGNWSAPALSDAERMPYTLPLSIVGDYTSIST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEHEEECCCCCCCC
GTDWWGGMPDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAGPGDDPKSRYA
CCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCEE
LAYGTLKMTTDVPAKRAFLKQLRDKYRNQAGLSKAWGIDLPAWELMEDPGFEAPLPNPEH
EEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCC
PEIEADFKYFQKVFADTYFKTISDSLKWHAPNQLLLGGRFATSTPEAVASCAQYCDVLSF
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC
NMYTLQPQDGYDFAALHNLDKPVLITEFNFGSTDRGPFWGGVTPLSKEEDRGPAYANFLK
CEEEECCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QALSEPSIVGVHWFQYLDQPVTGRLLDGENGHFGLVGVTDLPFQGFVETVRKSNLATVDQ
HHHCCCCEEEHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHH
LSKEAQKAAAAADKAGHETEGARKADAVKGPGQGAGHTGGHSGNGH
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRRSLPAVFALVFAAPLFAAPAGQQTLFNFVRPADVVKVATENADLPQANAEQTPEGEV
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCHHH
LRRVTFNPTARPTLRLSPQTGAWDWSQSGMMSLRIQSAMNWAVTVYVQIQSNDGKTLVSR
EEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHCCCEEEEEEEEEECCCCCEEEEE
VDLPAGPAQTLLVPLTATSPLSQGMKAGPAMPMMIDGQRILLASSSGELDRSQVVSVSLS
CCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEC
MDQPKAAQSLLLERFGVQDEGEVIKSAYGNLVDAYGQSTRGKWPEKVANDEQLKSAAAKE
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHH
QQQLSTWLAEREKSSLDKFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEECCCC
VSPEVNQTYVAGREYMFESLPKPEEPLASHFGEGDNRGGNGVDQGRGYNFGRWYDFYGAN
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHCCCC
LQRLYGEPCIPDSGNKAGVAEAAKAGAAEEAATNASAPVAASEQPKAGVAESAATSGQSV
HHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHH
ATQCKNTVDEQKWASHTLDRLQAWGFNTIGNWSAPALSDAERMPYTLPLSIVGDYTSIST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEHEEECCCCCCCC
GTDWWGGMPDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAGPGDDPKSRYA
CCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCEE
LAYGTLKMTTDVPAKRAFLKQLRDKYRNQAGLSKAWGIDLPAWELMEDPGFEAPLPNPEH
EEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCCCCCCCCCCCC
PEIEADFKYFQKVFADTYFKTISDSLKWHAPNQLLLGGRFATSTPEAVASCAQYCDVLSF
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC
NMYTLQPQDGYDFAALHNLDKPVLITEFNFGSTDRGPFWGGVTPLSKEEDRGPAYANFLK
CEEEECCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QALSEPSIVGVHWFQYLDQPVTGRLLDGENGHFGLVGVTDLPFQGFVETVRKSNLATVDQ
HHHCCCCEEEHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHH
LSKEAQKAAAAADKAGHETEGARKADAVKGPGQGAGHTGGHSGNGH
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8193156 [H]