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The map label for this gene is cph2 [H]

Identifier: 77457285

GI number: 77457285

Start: 1226630

End: 1227631

Strand: Direct

Name: cph2 [H]

Synonym: Pfl01_1058

Alternate gene names: 77457285

Gene position: 1226630-1227631 (Clockwise)

Preceding gene: 77457284

Following gene: 77457286

Centisome position: 19.05

GC content: 62.28

Gene sequence:

>1002_bases
ATGAATGACTTACAGATCGATGACATCAAAACCGACGAGAACGCCGCCATGGTGTTGTTGGTGGACGATCAGGCGATGAT
CGGCGAAGCCGTGCGCCGTGGGCTGTCGAATGAAGAGAACATCGACTTCCATTTCTGCTCCGACCCGCATCTTGCCGTGG
CCCACGCGGTGCGGATCAAACCCACCGTGATCCTGCAGGATCTGGTGATGCCCGGCCTCGACGGTCTGAGCCTGGTGCGC
GAATACCGCAATCACCCGGCGACCAAGGACATTCCGATCATCGTCCTCTCGACCAAGGAAGACCCGCTGATCAAGAGCGC
GGCGTTCTCCGCCGGGGCCAACGATTACCTGGTGAAACTGCCGGACAACATCGAACTGGTGGCGCGCATCCGCTATCACT
CACGCTCCTACATGACGTTGCTGCAACGGGACGCGGCCTATCGCGCGTTGCGGGTCAGCCAGCAGCAATTGCTCGACACC
AATCTGGTGTTGCAGCGCCTGATGAACTCCGACGGCCTGACCGGACTGTCCAACCGCCGGCATTTCGACGAATACCTGGA
GCTGGAATGGCGCCGCTCGCTGCGTGACCAGAGCCAGTTGTCGCTGCTGATGATCGACGTCGATTACTTCAAGTCCTACA
ACGACACGTTCGGGCACGTCGAAGGCGACGAAGCGTTGCGCAAGGTTGCTACGGCGATTCGCGAAGCCAGTGCCCGGCCG
TCCGACCTGCCGGCGCGTTATGGCGGCGAAGAGTTTGCGCTGGTGCTGCCCAACACCTCGCCGGGCGGGGCACGGCTGGT
GGCGGAAAAGCTGCGCCAGACGGTCGCGGCGCTGAAGATTCCGCACAATGCCCCGGCCGAAGGATCGAGCCTGACCATCA
GCATCGGCCTGGCGACCATGGTGCCGGAGTCGGGCAGCGACTGCCGGTTGCTGATCTCGGCGGCGGACCGCGGCCTGTAC
CTGGCCAAGAACAACGGGCGCAATCAGGTGGGGATTGAATGA

Upstream 100 bases:

>100_bases
CCGTCCACTGGAAAAGATAGCGCCACGATTGCTGGAGATATTCCCCAAATGAACGTGTTCCTCCGCATTCCTGGCCCCCG
CAACACTCAGGTGACCGCCC

Downstream 100 bases:

>100_bases
ACCATTGGGTTCATTCGCCTCAAGAGCCGCCAGACGGGCTGCCGTGACAGCGTGATTACGTTATACTCGCCGGCTTTCAA
AAGTTCGCCAACGAGTGCTG

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNDLQIDDIKTDENAAMVLLVDDQAMIGEAVRRGLSNEENIDFHFCSDPHLAVAHAVRIKPTVILQDLVMPGLDGLSLVR
EYRNHPATKDIPIIVLSTKEDPLIKSAAFSAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDT
NLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYNDTFGHVEGDEALRKVATAIREASARP
SDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVAALKIPHNAPAEGSSLTISIGLATMVPESGSDCRLLISAADRGLY
LAKNNGRNQVGIE

Sequences:

>Translated_333_residues
MNDLQIDDIKTDENAAMVLLVDDQAMIGEAVRRGLSNEENIDFHFCSDPHLAVAHAVRIKPTVILQDLVMPGLDGLSLVR
EYRNHPATKDIPIIVLSTKEDPLIKSAAFSAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDT
NLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYNDTFGHVEGDEALRKVATAIREASARP
SDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVAALKIPHNAPAEGSSLTISIGLATMVPESGSDCRLLISAADRGLY
LAKNNGRNQVGIE
>Mature_333_residues
MNDLQIDDIKTDENAAMVLLVDDQAMIGEAVRRGLSNEENIDFHFCSDPHLAVAHAVRIKPTVILQDLVMPGLDGLSLVR
EYRNHPATKDIPIIVLSTKEDPLIKSAAFSAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDT
NLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYNDTFGHVEGDEALRKVATAIREASARP
SDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVAALKIPHNAPAEGSSLTISIGLATMVPESGSDCRLLISAADRGLY
LAKNNGRNQVGIE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=42.5, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=37.3493975903614, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=39.1061452513966, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=34.7058823529412, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=34.9693251533742, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=36.6120218579235, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=32.5443786982249, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=35.1851851851852, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=31.7073170731707, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=33.1395348837209, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=32.6923076923077, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=33.1288343558282, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788394, Length=160, Percent_Identity=29.375, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36903; Mature: 36903

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLQIDDIKTDENAAMVLLVDDQAMIGEAVRRGLSNEENIDFHFCSDPHLAVAHAVRIK
CCCCCCCCEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHEEEECC
PTVILQDLVMPGLDGLSLVREYRNHPATKDIPIIVLSTKEDPLIKSAAFSAGANDYLVKL
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEC
PDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRR
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
HFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYNDTFGHVEGDEALRKVATAIREASARP
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVAALKIPHNAPAEGSSLTISIGLATM
CCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEE
VPESGSDCRLLISAADRGLYLAKNNGRNQVGIE
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MNDLQIDDIKTDENAAMVLLVDDQAMIGEAVRRGLSNEENIDFHFCSDPHLAVAHAVRIK
CCCCCCCCEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHEEEECC
PTVILQDLVMPGLDGLSLVREYRNHPATKDIPIIVLSTKEDPLIKSAAFSAGANDYLVKL
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEC
PDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRR
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
HFDEYLELEWRRSLRDQSQLSLLMIDVDYFKSYNDTFGHVEGDEALRKVATAIREASARP
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SDLPARYGGEEFALVLPNTSPGGARLVAEKLRQTVAALKIPHNAPAEGSSLTISIGLATM
CCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEE
VPESGSDCRLLISAADRGLYLAKNNGRNQVGIE
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]