| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fct [H]
Identifier: 77457101
GI number: 77457101
Start: 1019498
End: 1021603
Strand: Reverse
Name: fct [H]
Synonym: Pfl01_0874
Alternate gene names: 77457101
Gene position: 1021603-1019498 (Counterclockwise)
Preceding gene: 77457102
Following gene: 77457100
Centisome position: 15.87
GC content: 60.54
Gene sequence:
>2106_bases ATGTCGTCTCGAAAAAAGGCCTCCCTCCTCGGCCTGACCCTTGGCCTGCTGGGCGATCCCGCGTTTGCAGATGAACCGCA AACGCTTGAACTCGACGCCATCAGCGTCATCTCCGATTACGAATCCCCTGCCGGCCCGGTCAAAGGCTATCGCGCTACCC GCTCGTCCAGCGCCACCAAAACCGACACCGCGATCCGCGATATTCCGCAGGCCATCAGCGTGGTGCCCGCCAGCGTGCTC AAGGATCTGGGCAGCACCAGCGTAGAACGCGCGCTGGATTTCGCCGGTGGCGTGTCGAAGCAAAACAACTTCGGCGGCCT GACGCTTTACGAATACAGCGTGCGCGGCTTCACCACCTCTGAGTTTTACCAAGACGGTTTCAGCGCCAACCGTGGTTATC CGAGCACACCGGACGCCGCCAACATCGAGCGCATCGAAGTGCTAAAAGGACCGGCCGCCAGCCTGTATGGCCGAGGTGAT CCGGGCGGCACGGTAAACATCGTCACCAAAAAACCGCAGCCAGCGGCCTTCACCACCCTGCAAACCAGCGCCGGCAGTTG GGATCGCTATCGCACCGCGCTGGACGTCAACACGCCGCTGGATGATCAGGGTGATGTGCTGTCGCGAATCAATCTCGCGG TCGAGGACAACAACAGCTTTCGCGACCACGTCGACAGTAAACGTGTATTCGTTGCCCCCTCTTTCAGTTGGCAGTTGAAC CCGGACACCAGCCTGCTGGTGGAGAGCGAATTCGTGCGTCATAGCTCGACCTTCGACCGCGGCATCGTTGCACCTAACAA TAAATGGAGCGGCGTCTCGCGCTCGACATTCCTGGGTGAGCCGAACGACGGCAACATCGACAACCACAACAACAGACTGC AAGCCACGCTTGAGCACCACCTCAACGATGCCTGGAAACTGCGCCTGGTCAGCCATTACAAGGAAGGCAAACTCTGGGGT TTCGCCTCCGAAAACCGTCCCTTGAATGCCGATGGCCACACCGTCAACCGCCGCTATCGCGAACGCGATACCAACTGGCA CGACAGCATCACCCAACTGGAACTGCGCGGCCTGTTCGACCTCGGCACCTGGCAGCACGAACTGCTGATCGGCAGCGAGT ACGAGAATTTCCGCAAGAACGAGCGCGTCACCACCATCGCCGGCGGGCCTTACGCCATCGATATCTATAACCCGGTGTAC GGCCAGCCCAAACCCAACGGCGCACGCTCCGGTACAGACTTCTTCGAACACGTCGAAAGCCATGCGCTGAACCTGCAGGA TCAAATCGTCTTCAGCGAAAAACTGCGCGGGATGATCGGGGCCCGATTCGAGCACTTCGAGCAAACCATCGATGACCACA GCCGCAACACCACCAGCCGCCAGACCCACGACGCGCTCACCCAACGTGCCGGCCTGCTCTATCAACTGACACCGGACACC GGCCTGTTCGCCAACGCCTCGACCTCATTCAAACCGAACAACGGCCTCGATGTGGCTGGCAAATCCTTCGATCCGGAAGA AGGCGTGGGTTACGAAATCGGGATCAAGAACGAGCTGTTCGACGAACGTTTAAGCAGCACCCTCGCCTTCTTCCATATCG ACAAGGAAAACGTCCTCGCCCTCGACCCGGGCACCGATACCAGCCGCGCCATGGGCAAGGCCCGCAGCCGGGGTTTCGAT CTGCAGGTCACCGGGCAAGTCACCGACGCCGTCAGGGTGATCGGCGCCTTCGCCTGGATCGACGCCGAAGTCACCAAGGG TGATGCCGCGATCCCCGCCGGTAGCCGCATCCTCGGGGTGGCCAAACGCAGCGGCAGCCTGCTGGGTGTCTACGAGTTTC AGGACGGCCGCTTGCGCGGCTCGGATATCGGCGCGGCGTTCACTTACGTCGGTGACCGCTCAGGTGAGTCCGGCAGCGAT TTCGAGCTGCCGGCCTATCACACCGTCGACCTGCTGGCCCATTACAAGGCCAGCGACACCGTCACTCTCGGCCTGAACCT GAACAACCTGTTCGACGAAAAGTACTACGAGCGCTCGTACAGCAACTATTGGGTCAACCCCGGCGAGCCGCGCAATTTCA CGGTCAGCCTGACATTCAACCTGTAA
Upstream 100 bases:
>100_bases AAAAGAAGAGTAAGACTTTGTTCGCGTCACTGACGCGAATAACAGACATTCTCAACAGGCATGTTATATTGTTTCAATTA GCACATTGGAACAACATAAC
Downstream 100 bases:
>100_bases AAGGACGTCACCATGCATTTCGGCAAACTCTTATTGATCATCGCTGCGTTGTTCGCTGGCCAAGCATCAGCGCATGGTCT GTGGACCGAACAACGACGCG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 701; Mature: 700
Protein sequence:
>701_residues MSSRKKASLLGLTLGLLGDPAFADEPQTLELDAISVISDYESPAGPVKGYRATRSSSATKTDTAIRDIPQAISVVPASVL KDLGSTSVERALDFAGGVSKQNNFGGLTLYEYSVRGFTTSEFYQDGFSANRGYPSTPDAANIERIEVLKGPAASLYGRGD PGGTVNIVTKKPQPAAFTTLQTSAGSWDRYRTALDVNTPLDDQGDVLSRINLAVEDNNSFRDHVDSKRVFVAPSFSWQLN PDTSLLVESEFVRHSSTFDRGIVAPNNKWSGVSRSTFLGEPNDGNIDNHNNRLQATLEHHLNDAWKLRLVSHYKEGKLWG FASENRPLNADGHTVNRRYRERDTNWHDSITQLELRGLFDLGTWQHELLIGSEYENFRKNERVTTIAGGPYAIDIYNPVY GQPKPNGARSGTDFFEHVESHALNLQDQIVFSEKLRGMIGARFEHFEQTIDDHSRNTTSRQTHDALTQRAGLLYQLTPDT GLFANASTSFKPNNGLDVAGKSFDPEEGVGYEIGIKNELFDERLSSTLAFFHIDKENVLALDPGTDTSRAMGKARSRGFD LQVTGQVTDAVRVIGAFAWIDAEVTKGDAAIPAGSRILGVAKRSGSLLGVYEFQDGRLRGSDIGAAFTYVGDRSGESGSD FELPAYHTVDLLAHYKASDTVTLGLNLNNLFDEKYYERSYSNYWVNPGEPRNFTVSLTFNL
Sequences:
>Translated_701_residues MSSRKKASLLGLTLGLLGDPAFADEPQTLELDAISVISDYESPAGPVKGYRATRSSSATKTDTAIRDIPQAISVVPASVL KDLGSTSVERALDFAGGVSKQNNFGGLTLYEYSVRGFTTSEFYQDGFSANRGYPSTPDAANIERIEVLKGPAASLYGRGD PGGTVNIVTKKPQPAAFTTLQTSAGSWDRYRTALDVNTPLDDQGDVLSRINLAVEDNNSFRDHVDSKRVFVAPSFSWQLN PDTSLLVESEFVRHSSTFDRGIVAPNNKWSGVSRSTFLGEPNDGNIDNHNNRLQATLEHHLNDAWKLRLVSHYKEGKLWG FASENRPLNADGHTVNRRYRERDTNWHDSITQLELRGLFDLGTWQHELLIGSEYENFRKNERVTTIAGGPYAIDIYNPVY GQPKPNGARSGTDFFEHVESHALNLQDQIVFSEKLRGMIGARFEHFEQTIDDHSRNTTSRQTHDALTQRAGLLYQLTPDT GLFANASTSFKPNNGLDVAGKSFDPEEGVGYEIGIKNELFDERLSSTLAFFHIDKENVLALDPGTDTSRAMGKARSRGFD LQVTGQVTDAVRVIGAFAWIDAEVTKGDAAIPAGSRILGVAKRSGSLLGVYEFQDGRLRGSDIGAAFTYVGDRSGESGSD FELPAYHTVDLLAHYKASDTVTLGLNLNNLFDEKYYERSYSNYWVNPGEPRNFTVSLTFNL >Mature_700_residues SSRKKASLLGLTLGLLGDPAFADEPQTLELDAISVISDYESPAGPVKGYRATRSSSATKTDTAIRDIPQAISVVPASVLK DLGSTSVERALDFAGGVSKQNNFGGLTLYEYSVRGFTTSEFYQDGFSANRGYPSTPDAANIERIEVLKGPAASLYGRGDP GGTVNIVTKKPQPAAFTTLQTSAGSWDRYRTALDVNTPLDDQGDVLSRINLAVEDNNSFRDHVDSKRVFVAPSFSWQLNP DTSLLVESEFVRHSSTFDRGIVAPNNKWSGVSRSTFLGEPNDGNIDNHNNRLQATLEHHLNDAWKLRLVSHYKEGKLWGF ASENRPLNADGHTVNRRYRERDTNWHDSITQLELRGLFDLGTWQHELLIGSEYENFRKNERVTTIAGGPYAIDIYNPVYG QPKPNGARSGTDFFEHVESHALNLQDQIVFSEKLRGMIGARFEHFEQTIDDHSRNTTSRQTHDALTQRAGLLYQLTPDTG LFANASTSFKPNNGLDVAGKSFDPEEGVGYEIGIKNELFDERLSSTLAFFHIDKENVLALDPGTDTSRAMGKARSRGFDL QVTGQVTDAVRVIGAFAWIDAEVTKGDAAIPAGSRILGVAKRSGSLLGVYEFQDGRLRGSDIGAAFTYVGDRSGESGSDF ELPAYHTVDLLAHYKASDTVTLGLNLNNLFDEKYYERSYSNYWVNPGEPRNFTVSLTFNL
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=723, Percent_Identity=26.417704011065, Blast_Score=206, Evalue=4e-54, Organism=Escherichia coli, GI1787344, Length=749, Percent_Identity=25.5006675567423, Blast_Score=165, Evalue=1e-41, Organism=Escherichia coli, GI1787024, Length=779, Percent_Identity=26.0590500641849, Blast_Score=150, Evalue=4e-37, Organism=Escherichia coli, GI1787723, Length=685, Percent_Identity=22.3357664233577, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790743, Length=367, Percent_Identity=26.4305177111717, Blast_Score=70, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77236; Mature: 77105
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRKKASLLGLTLGLLGDPAFADEPQTLELDAISVISDYESPAGPVKGYRATRSSSATK CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCC TDTAIRDIPQAISVVPASVLKDLGSTSVERALDFAGGVSKQNNFGGLTLYEYSVRGFTTS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCHH EFYQDGFSANRGYPSTPDAANIERIEVLKGPAASLYGRGDPGGTVNIVTKKPQPAAFTTL HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCEEEEE QTSAGSWDRYRTALDVNTPLDDQGDVLSRINLAVEDNNSFRDHVDSKRVFVAPSFSWQLN ECCCCCCHHEEEEEECCCCCCCCCCHHHHEEEEEECCCCHHHHCCCCEEEEECCCEEEEC PDTSLLVESEFVRHSSTFDRGIVAPNNKWSGVSRSTFLGEPNDGNIDNHNNRLQATLEHH CCCEEEEEHHHHHCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH LNDAWKLRLVSHYKEGKLWGFASENRPLNADGHTVNRRYRERDTNWHDSITQLELRGLFD CCCCEEEEEEHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHEEEHHHCC LGTWQHELLIGSEYENFRKNERVTTIAGGPYAIDIYNPVYGQPKPNGARSGTDFFEHVES CCCCEEEEEECCCHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH HALNLQDQIVFSEKLRGMIGARFEHFEQTIDDHSRNTTSRQTHDALTQRAGLLYQLTPDT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCC GLFANASTSFKPNNGLDVAGKSFDPEEGVGYEIGIKNELFDERLSSTLAFFHIDKENVLA CEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCEEEEEEECCCCEEE LDPGTDTSRAMGKARSRGFDLQVTGQVTDAVRVIGAFAWIDAEVTKGDAAIPAGSRILGV ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE AKRSGSLLGVYEFQDGRLRGSDIGAAFTYVGDRSGESGSDFELPAYHTVDLLAHYKASDT EECCCCEEEEEEECCCEECCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCE VTLGLNLNNLFDEKYYERSYSNYWVNPGEPRNFTVSLTFNL EEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure SSRKKASLLGLTLGLLGDPAFADEPQTLELDAISVISDYESPAGPVKGYRATRSSSATK CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCC TDTAIRDIPQAISVVPASVLKDLGSTSVERALDFAGGVSKQNNFGGLTLYEYSVRGFTTS HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCHH EFYQDGFSANRGYPSTPDAANIERIEVLKGPAASLYGRGDPGGTVNIVTKKPQPAAFTTL HHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCEEEEE QTSAGSWDRYRTALDVNTPLDDQGDVLSRINLAVEDNNSFRDHVDSKRVFVAPSFSWQLN ECCCCCCHHEEEEEECCCCCCCCCCHHHHEEEEEECCCCHHHHCCCCEEEEECCCEEEEC PDTSLLVESEFVRHSSTFDRGIVAPNNKWSGVSRSTFLGEPNDGNIDNHNNRLQATLEHH CCCEEEEEHHHHHCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH LNDAWKLRLVSHYKEGKLWGFASENRPLNADGHTVNRRYRERDTNWHDSITQLELRGLFD CCCCEEEEEEHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHEEEHHHCC LGTWQHELLIGSEYENFRKNERVTTIAGGPYAIDIYNPVYGQPKPNGARSGTDFFEHVES CCCCEEEEEECCCHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH HALNLQDQIVFSEKLRGMIGARFEHFEQTIDDHSRNTTSRQTHDALTQRAGLLYQLTPDT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCC GLFANASTSFKPNNGLDVAGKSFDPEEGVGYEIGIKNELFDERLSSTLAFFHIDKENVLA CEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCEEEEEEECCCCEEE LDPGTDTSRAMGKARSRGFDLQVTGQVTDAVRVIGAFAWIDAEVTKGDAAIPAGSRILGV ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE AKRSGSLLGVYEFQDGRLRGSDIGAAFTYVGDRSGESGSDFELPAYHTVDLLAHYKASDT EECCCCEEEEEEECCCEECCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCE VTLGLNLNNLFDEKYYERSYSNYWVNPGEPRNFTVSLTFNL EEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]