Click here to switch to the map view.

The map label for this gene is rpoX [H]

Identifier: 77457083

GI number: 77457083

Start: 1005090

End: 1005398

Strand: Reverse

Name: rpoX [H]

Synonym: Pfl01_0856

Alternate gene names: 77457083

Gene position: 1005398-1005090 (Counterclockwise)

Preceding gene: 77457084

Following gene: 77457082

Centisome position: 15.62

GC content: 51.13

Gene sequence:

>309_bases
ATGCAAGTCAACATCAGTGGACACCAACTGGAAGTTACCCAGCCTCTGCGCGAGTACATCGAGCTCAAGCTCAAGAAGCT
CGAAGGGCATTTCGACAAGATCACCAACGTACAGGTCACGATGTGCGTCGAAAAGCTGAAGCAGAAAATCGAAGCCACGC
TGCATATTCCCGGCAATGAGGTCGTCGCAAACGCGGAACATACCGATATGTACGCTGCGATCGACGCGTTGACCGACAAG
CTTGATAAACAACTCAAAAAGCATAAGGAAAAGACCCAGAGCCTGCTTCAGGGCGCTACCGGTCGATAA

Upstream 100 bases:

>100_bases
TCGAGCGAACGCAAGCGGTTGATGTAAGCCACGTTACAGCGTTCCAGTGGCAGGCTTTTCGGCCTGCCGCTTTATGCACT
GGCAACGAAGGAGAAGCTGT

Downstream 100 bases:

>100_bases
CCCCCAACCCCATGATCCGACTTGAAAGTATCCTGACCCCCGGCCGTTCCCTGGTGAACGTGCCGGGCGGCAGTAAAAAG
AAAGCCCTCGAACAAATTGC

Product: 30S ribosomal protein S30P / sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MQVNISGHQLEVTQPLREYIELKLKKLEGHFDKITNVQVTMCVEKLKQKIEATLHIPGNEVVANAEHTDMYAAIDALTDK
LDKQLKKHKEKTQSLLQGATGR

Sequences:

>Translated_102_residues
MQVNISGHQLEVTQPLREYIELKLKKLEGHFDKITNVQVTMCVEKLKQKIEATLHIPGNEVVANAEHTDMYAAIDALTDK
LDKQLKKHKEKTQSLLQGATGR
>Mature_102_residues
MQVNISGHQLEVTQPLREYIELKLKKLEGHFDKITNVQVTMCVEKLKQKIEATLHIPGNEVVANAEHTDMYAAIDALTDK
LDKQLKKHKEKTQSLLQGATGR

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=91, Percent_Identity=52.7472527472528, Blast_Score=100, Evalue=1e-23,
Organism=Escherichia coli, GI1788949, Length=94, Percent_Identity=32.9787234042553, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11563; Mature: 11563

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNISGHQLEVTQPLREYIELKLKKLEGHFDKITNVQVTMCVEKLKQKIEATLHIPGNE
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCC
VVANAEHTDMYAAIDALTDKLDKQLKKHKEKTQSLLQGATGR
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQVNISGHQLEVTQPLREYIELKLKKLEGHFDKITNVQVTMCVEKLKQKIEATLHIPGNE
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCC
VVANAEHTDMYAAIDALTDKLDKQLKKHKEKTQSLLQGATGR
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2602128; 12534463 [H]