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The map label for this gene is nahR [H]

Identifier: 77456939

GI number: 77456939

Start: 841692

End: 841967

Strand: Reverse

Name: nahR [H]

Synonym: Pfl01_0711

Alternate gene names: 77456939

Gene position: 841967-841692 (Counterclockwise)

Preceding gene: 77456940

Following gene: 77456931

Centisome position: 13.08

GC content: 58.33

Gene sequence:

>276_bases
ATGCTATTCAATGAAGACAACTTCGCGGATATCGACCTGAACCTGATCATCATTTTTCTGGTGCTGTTCCGCGAACGCAG
CGTGTCCCGCACGGCCGAACGTCTGCACGTCAAACAACCCGCCATCAGCGGATCGCTGGCACGGCTGCGCAAGCGCTTCG
ATGATCCGTTGTTTCTGCGCTCGTCGAGAACCATGCGCCCGACCTCGAAAGCCGAGCAACTGGCGCAAGCGCTGACGCCG
GCCATCAAGCAAATCGAAGCGGTGATCCGGCTCTGA

Upstream 100 bases:

>100_bases
ACCGTCTGAACGACGAACTGCGCCTGGCACCCGAGCAGTGATCCAGACACCCGCCGGCTTCGGCTGAAGCCTGCCGGCGG
GTCATGACAGGGATGTAACC

Downstream 100 bases:

>100_bases
AAAACCGGCGAAAAAAAACCTGCGGGGGTTCGCTTCCGCAGGTTTCATTTCATCAGGCCGACTTGAGCGCCTGAGCGTAC
TCGACCCGAGCCCAGAACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MLFNEDNFADIDLNLIIIFLVLFRERSVSRTAERLHVKQPAISGSLARLRKRFDDPLFLRSSRTMRPTSKAEQLAQALTP
AIKQIEAVIRL

Sequences:

>Translated_91_residues
MLFNEDNFADIDLNLIIIFLVLFRERSVSRTAERLHVKQPAISGSLARLRKRFDDPLFLRSSRTMRPTSKAEQLAQALTP
AIKQIEAVIRL
>Mature_91_residues
MLFNEDNFADIDLNLIIIFLVLFRERSVSRTAERLHVKQPAISGSLARLRKRFDDPLFLRSSRTMRPTSKAEQLAQALTP
AIKQIEAVIRL

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=80, Percent_Identity=38.75, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI87081684, Length=76, Percent_Identity=36.8421052631579, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 10479; Mature: 10479

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNEDNFADIDLNLIIIFLVLFRERSVSRTAERLHVKQPAISGSLARLRKRFDDPLFLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEC
SSRTMRPTSKAEQLAQALTPAIKQIEAVIRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLFNEDNFADIDLNLIIIFLVLFRERSVSRTAERLHVKQPAISGSLARLRKRFDDPLFLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEC
SSRTMRPTSKAEQLAQALTPAIKQIEAVIRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]