| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is dctB [H]
Identifier: 77456865
GI number: 77456865
Start: 747902
End: 750667
Strand: Reverse
Name: dctB [H]
Synonym: Pfl01_0637
Alternate gene names: 77456865
Gene position: 750667-747902 (Counterclockwise)
Preceding gene: 77456866
Following gene: 77456859
Centisome position: 11.66
GC content: 65.04
Gene sequence:
>2766_bases TTGAGTTCCGGTGACAAGCTGTTCGACCGCCTGCTCAATCGTCAAACGTCCACACCGCCAGCGGTCATGGACGACCCCGT GGTGCCCGGCGTCGGTTTGCAGCTGCATCTGGATGGCGAAGGCCAGGTCATCCACCTGACCGGGCCACTGCGCCATGTGC TGGCGCAACAACTGTCCGCCGCTCGCACGCCGCATCTGCTCGATTACCTGCTGCCGCACAGCGCGCTTGCGGTCGAAGGC GTGCCCGCCGACTGGCAGGGACAGTTGCTCGATCTGGATTTTTTCAGCCTCGCCGGTCCGCCGCTGCACTTGCGCGGCTG GGTACAGCCGCAGGGGGATGGCTGGGTTCTGCAACTGCTGGATATCGGCGACCTGCTGAGCGAAAGACGTCAGGCGCACA GCCGCGAGCAATGCCAGTGGCTCGCCGCACACATCCGCGACCACTTGCGGCTCTGCGGCCTGGCGCGTCTGCCACAGGTG CTGGGCGAACAGTTGCAGTGCCTGAGCCAGCGTTTTCAGGTGCCTTGCCTGGCCGTAGCGCTGCTGGATGAAGAGACCGA GGGCTGGCAGATTCATCAGCATTACAGCGCACCCGACGCCCCGCGACTGTGGGATATGGCGCAGCGCCTGGGTACCGGAC TCGACAGCCTTAACGGCGCCGCACCGCAACGCGTGCTGCCCGCCGAGCATCCCCGCCTGAGCAGCGTGTTCGGCCCCGCC GAAGGGTTTGCCGTGCCTTACCGCGACGCCCATGGCGTGGCGGCATGGTTGCTCTTCGGCTGTTTCAGCGCGCAGCCACA CACCGCCGAGTTGAGCGATCACGACTGGCTGCAACTGGCCGCCGCCGTCGCCGCGCCGCTGCTGGAACGCCTGCGTGAAC ATCGTCACCACTTGCAGCTGGAACGTCTGGAAATCCTGCAAAGCCTGCTCGGCACCGGTTGGTGGGAGGTGTTCAGCGAC AGCGCCGAAGTGCTGCTCGCCGATGCGCTGGCCGTCAGCCTCGGCTTGAGCGCCGGGCGCCTGCCGATTCAGGCCTGGTT CGCCCGGGTGCACCCGGCCGACCGCGAAGAACTGCGCAGCCGCCTGCAAGCCTTGCAGGACGAAGGTCAGGCGCTGGAGC TGTGCGTGCGCCTGCAACCCGTTGATCAGGCGCAACCGCAGTGGTTCCGCTTGCAGGGCCAGTCACTGGGCATCGGCGCC GAGCGGCGTCTCGTAGGCTTCATGCTCGACATCAGCGACATCAAGAACCAGCAACAGCAGGCCGCCGCTGCCCATGCGCG ACTGGACAACCTGATCGCCAGCGCGCCAGCGGTGATCTACGTGCAGCGCTATGTCGAGGGCGCGCTGCAGCCGACGTTTT TCAGCGCCAGCCTGCAACCATTGCTGGGCTGGAGCCTTGCCGACTGCGCCGACGGTGCGCTGGTGAATCATGTCCATCCC GACGATCGCGCGGCGTATTTCGAACGCACCCGGCAGTTGTTGCGCGAAGGTTCGGTGAGCACGCGCTACCGGATGCTCGA CACCCAGGGCAACACCCACTGGCTGCTCGACGAAGCCAAACTGTTGCGCGACGATCTCGGTCTGCCAGTGGAGGCTGTCG GGCTGTGGCTGGACGTTACCGACGCGACCCTCGCCGCCGAGCGGATCAAGACCAGCGAAGAACGCTATCGCATCCTCGTG GAAGATTCGCCGGCCATGATCTGCCGCTATCGCCCCGACCTGACCCTGACCTTCGGCAACCGGCCACTGGCGATGTATCT GGAGTGCGCCCCGGAACAACTGCCGGGGGTGAATCTGGGCAGCTGGATGTCGGACGAACAACGCGAGGCCTTCGTCCAGC GTCTGGCGCAACTGACTCCGGACGCGCCGGTGAGCAGTGCCGAAATCAACCTGCGCCTGCCGGGGCGCGAACATGCGTGG TGGATCTGGTCGGATCGCGGAGTGTTCGACGAGCAGGGCCGTCTGCTTGAAGTGCAAGCGGTGGGCCGTGACAACACCGA GGTCCGGCGTTCGCAGCAACAACTGACCCAAAGCGCGAAAATGGCCACCCTCGGCGAGATGGCCACGGGGCTGGCCCACG AGATCAATCAGCCGCTGAACGTGATGCGCATGGCCATCGTCAACGTGCTCAAACGTCTGGGCAACGGCGATGTGCAGATC GACTACCTGACCGACAAGCTCAACCGCATCGACACTCAGGTCCAGCGTGCGGCGCGGGTGGTCGATCACATGCGGGTGTT CGGCCGGCGCTCGGAAATCGAACAGCACCCGTTCAATCCGCTCGACGCCATCGAAGGCACCTTGTCGTTGCTGTCCGAAG GTCTGCGCGGCAAAGGCGTCGAGCTACGAATCGGCGAGGCGAACTTCCAGCTGCAGGTGCGCGGGTACGTCGATCAATTG GAACAGGTGTTGATCAACCTGATGGTCAACGCCCGGGACGCGCTGTTGAGCAAGCGTGAATCCAATCGCGACTTCCAGCC GTGGATTGCCGTGCATGCCGAACACGACGAACACGTGGTGCGGCTGTGGGTCGAGGACAACGGCGGCGGCATCGATCCGC GTTTGCTGGAGCGGATTTTCGAGCCGTTCTTCACCACCAAACCGGTGGGCGTCGGCACTGGCCTGGGCTTGTCGGTGAGT TACGGCATCGTCGAGAACATGGGCGGACGCCTGAGCGTGCGCAACGGCGACGACGGCGCCCGGTTCTGCATCGAATTGCC GATCGCCCTCGACGATCAGATCACCAGCGTCGCCCGCCCCGACTGA
Upstream 100 bases:
>100_bases CCAACAAGCTCAATCAGGCGTTACCGTTTCTGGTCTTGCCCGGTATCGGGGCGGTACCCAATCTACCGGCCAACCTGACC GCCAGCTCGAGCCTGCAATT
Downstream 100 bases:
>100_bases CAACTGAGATTGGCGCCGACATCGACCTGATTGAGGTTGATCCCCAGGGCCATCAACAGCGTGTTGATGAGGGTGTCGAG CAGCGGACTGAGCACCGTAT
Product: PAS/PAC sensor Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 921; Mature: 920
Protein sequence:
>921_residues MSSGDKLFDRLLNRQTSTPPAVMDDPVVPGVGLQLHLDGEGQVIHLTGPLRHVLAQQLSAARTPHLLDYLLPHSALAVEG VPADWQGQLLDLDFFSLAGPPLHLRGWVQPQGDGWVLQLLDIGDLLSERRQAHSREQCQWLAAHIRDHLRLCGLARLPQV LGEQLQCLSQRFQVPCLAVALLDEETEGWQIHQHYSAPDAPRLWDMAQRLGTGLDSLNGAAPQRVLPAEHPRLSSVFGPA EGFAVPYRDAHGVAAWLLFGCFSAQPHTAELSDHDWLQLAAAVAAPLLERLREHRHHLQLERLEILQSLLGTGWWEVFSD SAEVLLADALAVSLGLSAGRLPIQAWFARVHPADREELRSRLQALQDEGQALELCVRLQPVDQAQPQWFRLQGQSLGIGA ERRLVGFMLDISDIKNQQQQAAAAHARLDNLIASAPAVIYVQRYVEGALQPTFFSASLQPLLGWSLADCADGALVNHVHP DDRAAYFERTRQLLREGSVSTRYRMLDTQGNTHWLLDEAKLLRDDLGLPVEAVGLWLDVTDATLAAERIKTSEERYRILV EDSPAMICRYRPDLTLTFGNRPLAMYLECAPEQLPGVNLGSWMSDEQREAFVQRLAQLTPDAPVSSAEINLRLPGREHAW WIWSDRGVFDEQGRLLEVQAVGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQI DYLTDKLNRIDTQVQRAARVVDHMRVFGRRSEIEQHPFNPLDAIEGTLSLLSEGLRGKGVELRIGEANFQLQVRGYVDQL EQVLINLMVNARDALLSKRESNRDFQPWIAVHAEHDEHVVRLWVEDNGGGIDPRLLERIFEPFFTTKPVGVGTGLGLSVS YGIVENMGGRLSVRNGDDGARFCIELPIALDDQITSVARPD
Sequences:
>Translated_921_residues MSSGDKLFDRLLNRQTSTPPAVMDDPVVPGVGLQLHLDGEGQVIHLTGPLRHVLAQQLSAARTPHLLDYLLPHSALAVEG VPADWQGQLLDLDFFSLAGPPLHLRGWVQPQGDGWVLQLLDIGDLLSERRQAHSREQCQWLAAHIRDHLRLCGLARLPQV LGEQLQCLSQRFQVPCLAVALLDEETEGWQIHQHYSAPDAPRLWDMAQRLGTGLDSLNGAAPQRVLPAEHPRLSSVFGPA EGFAVPYRDAHGVAAWLLFGCFSAQPHTAELSDHDWLQLAAAVAAPLLERLREHRHHLQLERLEILQSLLGTGWWEVFSD SAEVLLADALAVSLGLSAGRLPIQAWFARVHPADREELRSRLQALQDEGQALELCVRLQPVDQAQPQWFRLQGQSLGIGA ERRLVGFMLDISDIKNQQQQAAAAHARLDNLIASAPAVIYVQRYVEGALQPTFFSASLQPLLGWSLADCADGALVNHVHP DDRAAYFERTRQLLREGSVSTRYRMLDTQGNTHWLLDEAKLLRDDLGLPVEAVGLWLDVTDATLAAERIKTSEERYRILV EDSPAMICRYRPDLTLTFGNRPLAMYLECAPEQLPGVNLGSWMSDEQREAFVQRLAQLTPDAPVSSAEINLRLPGREHAW WIWSDRGVFDEQGRLLEVQAVGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQI DYLTDKLNRIDTQVQRAARVVDHMRVFGRRSEIEQHPFNPLDAIEGTLSLLSEGLRGKGVELRIGEANFQLQVRGYVDQL EQVLINLMVNARDALLSKRESNRDFQPWIAVHAEHDEHVVRLWVEDNGGGIDPRLLERIFEPFFTTKPVGVGTGLGLSVS YGIVENMGGRLSVRNGDDGARFCIELPIALDDQITSVARPD >Mature_920_residues SSGDKLFDRLLNRQTSTPPAVMDDPVVPGVGLQLHLDGEGQVIHLTGPLRHVLAQQLSAARTPHLLDYLLPHSALAVEGV PADWQGQLLDLDFFSLAGPPLHLRGWVQPQGDGWVLQLLDIGDLLSERRQAHSREQCQWLAAHIRDHLRLCGLARLPQVL GEQLQCLSQRFQVPCLAVALLDEETEGWQIHQHYSAPDAPRLWDMAQRLGTGLDSLNGAAPQRVLPAEHPRLSSVFGPAE GFAVPYRDAHGVAAWLLFGCFSAQPHTAELSDHDWLQLAAAVAAPLLERLREHRHHLQLERLEILQSLLGTGWWEVFSDS AEVLLADALAVSLGLSAGRLPIQAWFARVHPADREELRSRLQALQDEGQALELCVRLQPVDQAQPQWFRLQGQSLGIGAE RRLVGFMLDISDIKNQQQQAAAAHARLDNLIASAPAVIYVQRYVEGALQPTFFSASLQPLLGWSLADCADGALVNHVHPD DRAAYFERTRQLLREGSVSTRYRMLDTQGNTHWLLDEAKLLRDDLGLPVEAVGLWLDVTDATLAAERIKTSEERYRILVE DSPAMICRYRPDLTLTFGNRPLAMYLECAPEQLPGVNLGSWMSDEQREAFVQRLAQLTPDAPVSSAEINLRLPGREHAWW IWSDRGVFDEQGRLLEVQAVGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQID YLTDKLNRIDTQVQRAARVVDHMRVFGRRSEIEQHPFNPLDAIEGTLSLLSEGLRGKGVELRIGEANFQLQVRGYVDQLE QVLINLMVNARDALLSKRESNRDFQPWIAVHAEHDEHVVRLWVEDNGGGIDPRLLERIFEPFFTTKPVGVGTGLGLSVSY GIVENMGGRLSVRNGDDGARFCIELPIALDDQITSVARPD
Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane-associated protein kinase that phosphorylates dctD in response to environmental signals [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=288, Percent_Identity=30.9027777777778, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI87081816, Length=264, Percent_Identity=27.6515151515151, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1790300, Length=295, Percent_Identity=28.135593220339, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR017055 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 102728; Mature: 102597
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSGDKLFDRLLNRQTSTPPAVMDDPVVPGVGLQLHLDGEGQVIHLTGPLRHVLAQQLSA CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHH ARTPHLLDYLLPHSALAVEGVPADWQGQLLDLDFFSLAGPPLHLRGWVQPQGDGWVLQLL CCCHHHHHHHCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCEEEEECCCCCCCCCEEEEH DIGDLLSERRQAHSREQCQWLAAHIRDHLRLCGLARLPQVLGEQLQCLSQRFQVPCLAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE LLDEETEGWQIHQHYSAPDAPRLWDMAQRLGTGLDSLNGAAPQRVLPAEHPRLSSVFGPA EECCCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHCCCC EGFAVPYRDAHGVAAWLLFGCFSAQPHTAELSDHDWLQLAAAVAAPLLERLREHRHHLQL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ERLEILQSLLGTGWWEVFSDSAEVLLADALAVSLGLSAGRLPIQAWFARVHPADREELRS HHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH RLQALQDEGQALELCVRLQPVDQAQPQWFRLQGQSLGIGAERRLVGFMLDISDIKNQQQQ HHHHHHCCCCCEEHHHEECCCCCCCCCEEEEECCCCCCCCHHHHHHHEEEHHHHHHHHHH AAAAHARLDNLIASAPAVIYVQRYVEGALQPTFFSASLQPLLGWSLADCADGALVNHVHP HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHHHCCCHHHHCCCCEECCCCC DDRAAYFERTRQLLREGSVSTRYRMLDTQGNTHWLLDEAKLLRDDLGLPVEAVGLWLDVT CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEHHHHHHHHHHCCCCHHHHEEEEECC DATLAAERIKTSEERYRILVEDSPAMICRYRPDLTLTFGNRPLAMYLECAPEQLPGVNLG HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECHHHCCCCCCC SWMSDEQREAFVQRLAQLTPDAPVSSAEINLRLPGREHAWWIWSDRGVFDEQGRLLEVQA CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE VGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEE DYLTDKLNRIDTQVQRAARVVDHMRVFGRRSEIEQHPFNPLDAIEGTLSLLSEGLRGKGV EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC ELRIGEANFQLQVRGYVDQLEQVLINLMVNARDALLSKRESNRDFQPWIAVHAEHDEHVV EEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEE RLWVEDNGGGIDPRLLERIFEPFFTTKPVGVGTGLGLSVSYGIVENMGGRLSVRNGDDGA EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHCCCCEEEEECCCCCC RFCIELPIALDDQITSVARPD EEEEEECCCCCCHHHHCCCCC >Mature Secondary Structure SSGDKLFDRLLNRQTSTPPAVMDDPVVPGVGLQLHLDGEGQVIHLTGPLRHVLAQQLSA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHH ARTPHLLDYLLPHSALAVEGVPADWQGQLLDLDFFSLAGPPLHLRGWVQPQGDGWVLQLL CCCHHHHHHHCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCEEEEECCCCCCCCCEEEEH DIGDLLSERRQAHSREQCQWLAAHIRDHLRLCGLARLPQVLGEQLQCLSQRFQVPCLAVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE LLDEETEGWQIHQHYSAPDAPRLWDMAQRLGTGLDSLNGAAPQRVLPAEHPRLSSVFGPA EECCCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHCCCC EGFAVPYRDAHGVAAWLLFGCFSAQPHTAELSDHDWLQLAAAVAAPLLERLREHRHHLQL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ERLEILQSLLGTGWWEVFSDSAEVLLADALAVSLGLSAGRLPIQAWFARVHPADREELRS HHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH RLQALQDEGQALELCVRLQPVDQAQPQWFRLQGQSLGIGAERRLVGFMLDISDIKNQQQQ HHHHHHCCCCCEEHHHEECCCCCCCCCEEEEECCCCCCCCHHHHHHHEEEHHHHHHHHHH AAAAHARLDNLIASAPAVIYVQRYVEGALQPTFFSASLQPLLGWSLADCADGALVNHVHP HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHHHCCCHHHHCCCCEECCCCC DDRAAYFERTRQLLREGSVSTRYRMLDTQGNTHWLLDEAKLLRDDLGLPVEAVGLWLDVT CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEHHHHHHHHHHCCCCHHHHEEEEECC DATLAAERIKTSEERYRILVEDSPAMICRYRPDLTLTFGNRPLAMYLECAPEQLPGVNLG HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECHHHCCCCCCC SWMSDEQREAFVQRLAQLTPDAPVSSAEINLRLPGREHAWWIWSDRGVFDEQGRLLEVQA CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE VGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLGNGDVQI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEE DYLTDKLNRIDTQVQRAARVVDHMRVFGRRSEIEQHPFNPLDAIEGTLSLLSEGLRGKGV EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC ELRIGEANFQLQVRGYVDQLEQVLINLMVNARDALLSKRESNRDFQPWIAVHAEHDEHVV EEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEE RLWVEDNGGGIDPRLLERIFEPFFTTKPVGVGTGLGLSVSYGIVENMGGRLSVRNGDDGA EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHCCCCEEEEECCCCCC RFCIELPIALDDQITSVARPD EEEEEECCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3671068 [H]